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UniProtKB - A0A6P7L1R2 (A0A6P7L1R2_BETSP)

Entry version 3 (07 Apr 2021)
Sequence version 1 (02 Dec 2020)
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Protein
Submitted name:

collagen alpha-1(XV) chain-like isoform X5

Gene

LOC114845011

Organism
Betta splendens (Siamese fighting fish)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
collagen alpha-1(XV) chain-like isoform X5Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:LOC114845011Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBetta splendens (Siamese fighting fish)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri158456 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Neoteleostei › Acanthomorphata › Anabantaria › Anabantiformes › Anabantoidei › Osphronemidae › Betta
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000515150 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome assembly

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 22Sequence analysisAdd BLAST22
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_502776966823 – 1340Sequence analysisAdd BLAST1318

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini133 – 322LAM_G_DOMAINInterPro annotationAdd BLAST190

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni40 – 76DisorderedSequence analysisAdd BLAST37
Regioni92 – 124DisorderedSequence analysisAdd BLAST33
Regioni321 – 781DisorderedSequence analysisAdd BLAST461
Regioni795 – 1062DisorderedSequence analysisAdd BLAST268
Regioni1118 – 1142DisorderedSequence analysisAdd BLAST25

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi343 – 377PolyampholyteSequence analysisAdd BLAST35
Compositional biasi405 – 427PolyampholyteSequence analysisAdd BLAST23
Compositional biasi430 – 469Pro-richSequence analysisAdd BLAST40
Compositional biasi514 – 531Pro-richSequence analysisAdd BLAST18
Compositional biasi554 – 570Pro-richSequence analysisAdd BLAST17
Compositional biasi655 – 670Pro-richSequence analysisAdd BLAST16
Compositional biasi1015 – 1059Pro-richSequence analysisAdd BLAST45

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

CollagenImportedARBA annotation, SignalSequence analysis

Family and domain databases

Conserved Domains Database

More...CDDi		cd00247, Endostatin-like, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		3.10.100.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR016186, C-type_lectin-like/link_sf
IPR008160, Collagen
IPR010515, Collagenase_NC10/endostatin
IPR013320, ConA-like_dom_sf
IPR016187, CTDL_fold
IPR001791, Laminin_G

Pfam protein domain database

More...Pfami		View protein in Pfam
PF01391, Collagen, 4 hits
PF06482, Endostatin, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00210, TSPN, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF49899, SSF49899, 1 hit
SSF56436, SSF56436, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 4 potential isoforms that are computationally mapped.Show allAlign All

A0A6P7L1R2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MMGAQCLALL LLLLLLLAPI RAQWWSFIWT NPKSVPTVHP SISAPTPVSP 
        60         70         80         90        100
GRSDSAGTGG WAEEDAGVRE GAVERSTPAA APALLLLPRA RASGHGHSSE 
       110        120        130        140        150
RPGRVSAEEN TGGGRARSQY KPLKHWKGGS GHHLNLTELI GVPLPPSVSF 
       160        170        180        190        200
TSGYDHSAAF HFGPDANIGR HTRTFVPGPF YRDFAVIVTV QPDSQRGGVL 
       210        220        230        240        250
FAITDARQKV VELGLALTPV SNGLQSILLY YTDREEAAHS HKAAAFTVPD 
       260        270        280        290        300
MTGQWTRFTV AVEHNEVRLH MDCGEPERTT FHRSEGKLTF SHNSGIFVAN 
       310        320        330        340        350
AGSTGLEKFV GSIGQLVIKD DPRAGEEQCE DDEPYTSGYA SGDDGLEDRD 
       360        370        380        390        400
AEQENVKETP GRTVHSAKED DSRPVKAPPT EAPKLEADMH FGRVTPTMTY 
       410        420        430        440        450
EEMVRRGPHQ TEEPGERSEE ARFRPGVKGE PGEPGPPGLP GPPGPTRPPG 
       460        470        480        490        500
HVQPGTRGPQ GPPGIPGFPG QPGRDGHPGN KGDKGETGQR GTQGFPGLDG 
       510        520        530        540        550
TAGTKGEKGD PGLSLPGPPG PPGPPGPPRS RGVPYGADAL GSGFEDLDSE 
       560        570        580        590        600
SVPIRGPPGP PGPPGPPGPA GTNLSSSSKA EGLFSGYAGP PGVPGKDGLP 
       610        620        630        640        650
GKPGIPGPAG KDGAAGLPGA AGVKGEQGLA GPPGPKGECG TEGGAGSPGP 
       660        670        680        690        700
QGPSGPQGER GPPGPPGPPG TKFFVEDMEG SGKSDMLIGA GPRGPQGPPG 
       710        720        730        740        750
LPGPQGPKGE DGAPGAPGIS VNGEPGDPGQ MGRPGPAGLP GPRGAKGEKG 
       760        770        780        790        800
SPGPKGNNGV DGLSIPGPPG PPGPPGPVTN LQDLLLNITD HVFNLTEIRG 
       810        820        830        840        850
PPGPTGQEGL PGRAGFPGPR GPKGDKGLPG VHGPSGLKGE KGDPGVIIAA 
       860        870        880        890        900
DGSILSAPRG PQGPKGNRGD RGFPGPPGHM GPMGPSGPKG EYGLPGRPGR 
       910        920        930        940        950
PGMPGKKGDR GDSVGQAGPP GPPGPPGPPG RILGLNGDSE ARGNSVGAKG 
       960        970        980        990       1000
DKGDKGIPGE PGTPVSGFIE GFVGAKGDQG YKGQKGDACM PGLPGPPGRA 
      1010       1020       1030       1040       1050
GLVGPKGESI VGPPGPAGLP GPPGPSGVGR PGPRGPPGPA GPPGSAHDSG 
      1060       1070       1080       1090       1100
PPGPPGLPGY ANQVPIYVTT QALPAATQAL TEGTLAYVSE RGGDLYVRTL 
      1110       1120       1130       1140       1150
DGWRKILLGE LIVQDPSSSA VSQDTGEWSR PHRTHSQELQ EGRRGYQPSY 
      1160       1170       1180       1190       1200
NLLPQTFNAV PGLHLVALNS PLKGDMRGIR GADFQCYQQA RSMGLTATYR 
      1210       1220       1230       1240       1250
AFLSSHLQDL ATIVRKADRN HMPVVNLKGE VLFSSWAAIF DGNGGLFNPS 
      1260       1270       1280       1290       1300
TAIYSFDGRN VMTDPAWPEK LVWHGSSTAG IRLTTTYCEA WRTADVAVTG 
      1310       1320       1330       1340
QAALLQTGRL LGQHTRSCSN HYIALCIENT FVGGANVGRS
Length:1,340
Mass (Da):136,674
Last modified:December 2, 2020 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i624012491CEC3FEC
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 4 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A6P7L1R5A0A6P7L1R5_BETSP
collagen alpha-1(XV) chain-like iso...
LOC114845011
1,394Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A6P7L1U4A0A6P7L1U4_BETSP
collagen alpha-1(XV) chain-like iso...
LOC114845011
1,409Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A6P7L3Q8A0A6P7L3Q8_BETSP
collagen alpha-1(XV) chain-like iso...
LOC114845011
1,306Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A6P7L5Y9A0A6P7L5Y9_BETSP
collagen alpha-1(XV) chain-like iso...
LOC114845011
1,355Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

NCBI Reference Sequences

More...RefSeqi		XP_028988576.1, XM_029132743.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

RefSeqiXP_028988576.1, XM_029132743.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Family and domain databases

CDDicd00247, Endostatin-like, 1 hit
Gene3Di3.10.100.10, 1 hit
InterProiView protein in InterPro
IPR016186, C-type_lectin-like/link_sf
IPR008160, Collagen
IPR010515, Collagenase_NC10/endostatin
IPR013320, ConA-like_dom_sf
IPR016187, CTDL_fold
IPR001791, Laminin_G
PfamiView protein in Pfam
PF01391, Collagen, 4 hits
PF06482, Endostatin, 2 hits
SMARTiView protein in SMART
SM00210, TSPN, 1 hit
SUPFAMiSSF49899, SSF49899, 1 hit
SSF56436, SSF56436, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A6P7L1R2_BETSP
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A6P7L1R2
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: December 2, 2020
Last sequence update: December 2, 2020
Last modified: April 7, 2021
This is version 3 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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