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UniProtKB - A0A6P6EJC6 (A0A6P6EJC6_OCTDE)
Protein
Submitted name:
girdin isoform X1
Gene
Ccdc88a
Organism
Octodon degus (Degu) (Sciurus degus)
Status
Functioni
GO - Molecular functioni
- actin binding Source: InterPro
GO - Biological processi
- cell migration Source: InterPro
- cytoskeleton-dependent intracellular transport Source: InterPro
- regulation of actin cytoskeleton organization Source: InterPro
Names & Taxonomyi
Protein namesi | Submitted name: girdin isoform X1Imported |
Gene namesi | Name:Ccdc88aImported |
Organismi | Octodon degus (Degu) (Sciurus degus)Imported |
Taxonomic identifieri | 10160 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Hystricomorpha › Octodontidae › Octodon |
Proteomesi |
|
Subcellular locationi
Other locations
- cytoplasm Source: UniProtKB-KW
Keywords - Cellular componenti
CytoplasmARBA annotationStructurei
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 12 – 132 | Calponin-homology (CH)InterPro annotationAdd BLAST | 121 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 223 – 246 | DisorderedSequence analysisAdd BLAST | 24 | |
Regioni | 816 – 839 | DisorderedSequence analysisAdd BLAST | 24 | |
Regioni | 1007 – 1035 | DisorderedSequence analysisAdd BLAST | 29 | |
Regioni | 1407 – 1459 | DisorderedSequence analysisAdd BLAST | 53 | |
Regioni | 1559 – 1601 | DisorderedSequence analysisAdd BLAST | 43 | |
Regioni | 1769 – 1803 | DisorderedSequence analysisAdd BLAST | 35 |
Coiled coil
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Coiled coili | 197 – 217 | Sequence analysisAdd BLAST | 21 | |
Coiled coili | 246 – 301 | Sequence analysisAdd BLAST | 56 | |
Coiled coili | 315 – 366 | Sequence analysisAdd BLAST | 52 | |
Coiled coili | 377 – 425 | Sequence analysisAdd BLAST | 49 | |
Coiled coili | 462 – 573 | Sequence analysisAdd BLAST | 112 | |
Coiled coili | 582 – 747 | Sequence analysisAdd BLAST | 166 | |
Coiled coili | 876 – 896 | Sequence analysisAdd BLAST | 21 | |
Coiled coili | 911 – 945 | Sequence analysisAdd BLAST | 35 | |
Coiled coili | 1125 – 1152 | Sequence analysisAdd BLAST | 28 | |
Coiled coili | 1181 – 1232 | Sequence analysisAdd BLAST | 52 | |
Coiled coili | 1268 – 1337 | Sequence analysisAdd BLAST | 70 | |
Coiled coili | 1356 – 1383 | Sequence analysisAdd BLAST | 28 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 225 – 244 | Polar residuesSequence analysisAdd BLAST | 20 | |
Compositional biasi | 1416 – 1459 | Polar residuesSequence analysisAdd BLAST | 44 | |
Compositional biasi | 1772 – 1803 | Polar residuesSequence analysisAdd BLAST | 32 |
Keywords - Domaini
Coiled coilSequence analysisPhylogenomic databases
OMAi | LNNQCEX |
Family and domain databases
Gene3Di | 1.10.418.10, 1 hit |
InterProi | View protein in InterPro IPR001715, CH-domain IPR036872, CH_dom_sf IPR027717, Girdin IPR043936, HOOK_N |
PANTHERi | PTHR18947:SF30, PTHR18947:SF30, 1 hit |
Pfami | View protein in Pfam PF19047, HOOK_N, 1 hit |
PROSITEi | View protein in PROSITE PS50021, CH, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 8 potential isoforms that are computationally mapped.Show allAlign All
A0A6P6EJC6-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MENEIFTPLL EQFMTSPLVT WVKTFGPLAA GNGTNLDEYV ALVDGVFLNQ
60 70 80 90 100
VMLQINPKSE NQRVNKKVNN DASLRIHNLS ILVRQIKFYY QDTLQQLIMM
110 120 130 140 150
SLPNVLIIGK NPFSEQGTEE VKKLLLLLLG CAVQCQKKEE FIERIQGLDF
160 170 180 190 200
DTKAAVAAHI QEVTHNQENV FDLQWMEVTD MSQEDIEPLL KNMALHLKRL
210 220 230 240 250
IDERDEHSET IVELSEERDG LHFLPHSSSS AQSPCGSPGM KRTESRQHLS
260 270 280 290 300
VELADAKAKI RRLRQELEEK TEQLLDCKQE LEQMEIELKR LQQENMNLLS
310 320 330 340 350
DARSARMYRD ELDALREKAI RVDKLESEVS RYKERLHDIE FYKARVEELK
360 370 380 390 400
EDNQVLLETK TMLEDQLEGT RARSDKLHEL EKENLQLKAK LHDMEMERDM
410 420 430 440 450
DRKKIEELME ENMTLEMAQK QSMDESLHLG WELEQISRTS ELSEAPQKSL
460 470 480 490 500
GHEVNELTSS RLLKLEMENQ SLTKTVEELR STMDSAEGNT SKILKLEKEN
510 520 530 540 550
QRLNKKVEIL ENEIIQEKQS LQTCQNLSKD LMKEKAQLEK TIETLRENSE
560 570 580 590 600
RQLKILEQEN EHLNQTVSSL RQRSQISAEA RVKDIEKENK ILHESIKETS
610 620 630 640 650
SKLSKIEFEK RQIRKELEHY KEKGERAEEL ENELHHLEKE NELLQKKITN
660 670 680 690 700
LKITCEKIEA LEQENSELER ENRKLKKTLD SFKNLTFQLE SLEKENSQLD
710 720 730 740 750
EENLELRRNV ESLKCASMKM AQLQLENKEL ESEKEQLKKG LELMKASFKK
760 770 780 790 800
TERLEVSYQG LDTENQRLQK ALENSNKKIQ QLESELQDLE MENQTLQKNL
810 820 830 840 850
EELKISSKRL EQLEKENKSL EQETSQLEKD KKQLEKENKR LRQQAEIKDT
860 870 880 890 900
TLEENNVKIG NLEKENKTLF KEIGIYKESC VRLKELEKEN KELVKRATID
910 920 930 940 950
VKTLVTLRED LVSEKLKTQQ MNNDLEKLTH ELEKIGLNKE RLLHDEQSTD
960 970 980 990 1000
DSRYKLLESK LESTLKKSLE IKEEKIAALE ARLEESTNYN QQLRQELKTV
1010 1020 1030 1040 1050
KKNYEGLKQR QDEERMVQSS PPVSGEDNKW ERESQETTRE LLKVKDRLIE
1060 1070 1080 1090 1100
VERNNATLQA EKQALKTQLK QLETQNNNLQ AQILALQRQT VSLQEQNTTL
1110 1120 1130 1140 1150
QTQNAKLQVE NSTLNSQSTS LMNQNAQLLI QQSSLENENE SIIKEREDLK
1160 1170 1180 1190 1200
SLYDSLVKDH EKLELLHERQ ASEYESLISK HGTLKSAHKN LEAEHKDLED
1210 1220 1230 1240 1250
RYNQLLKQKG QLEDLEKMLK VEQEKMLLEN KNHEMVAAEY KKLCGENDRL
1260 1270 1280 1290 1300
NHTYSQLLKE TEVLQTDHKN LKSLLNNSKL EQTRLEAEFS KLKEQYQQLD
1310 1320 1330 1340 1350
ITSTKLNNQC ELLSQLKGNL EEENRHLLDQ IQTLMLQNRT LLEQNMESKD
1360 1370 1380 1390 1400
LFHVEQRQYI DKLNELRRQK EKLEEKIMDQ YKFYDPSPPR RRGNWITLKM
1410 1420 1430 1440 1450
RKLIKSKKDI NRERQKSLTL TPTRSDSSEG FLQLPHQDSQ DSSSVGSNSL
1460 1470 1480 1490 1500
EDGQTLGTKK SSMVALKRLP FLRNRPKDKD KMKACYRRSM SMNDLVQSMV
1510 1520 1530 1540 1550
LAGQWTGSTE NLEVPDDIST GKRRKELGAM AFSTTAINFS TVNSSAGFRS
1560 1570 1580 1590 1600
KQLVNNKDTT SFEDISPQGI SDDSSTGSRV HASRPASLDS GRTSTSNSNN
1610 1620 1630 1640 1650
NASLHEVKAG AVNNQSRPQS HSSGEFSLLH DYEAWSSSGS SPIQYLKRQA
1660 1670 1680 1690 1700
RSSPVLQHKI PESLETRTHH KIKTGSPGSE VVTLQQFLEE SNKLTSIQLK
1710 1720 1730 1740 1750
SSSQENLLDE VMKSLSVSSD FLGKDKPVSC GLARSVSGKT PGDFCDRRTT
1760 1770 1780 1790 1800
KPEFVRAGSR KTEDAYVISS AGKPTPGTQG KIKFVKETSV SRQSKDSNPY
1810 1820 1830 1840 1850
ATLPRASSVI STAEGTTRRT SIHDFLTKDS RLPVSIDSSQ PAADNSITAA
1860 1870 1880 1890 1900
SSEYPLHQSP SHKLSGLSQS VGSYVQNDLA ADLPESLYSQ TKNSRTKRSY
1910 1920 1930 1940 1950
FLNQTFSTTN MPYDIFGISC KDSIESFAVV HSSQPFLSLN TELVSNISGL
1960 1970 1980 1990 2000
PLRLTPRETN QASASVEEAV HQGNGQFSEA QNPSDNNTQS CVDSSNRIPP
2010 2020
ACLYPDDTEA ALLVSEDNQT IWYEYGCV
Computationally mapped potential isoform sequencesi
There are 8 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketA0A6P3EV58 | A0A6P3EV58_OCTDE | girdin isoform X8 | Ccdc88a | 1,871 | Annotation score: | ||
A0A6P3F9N6 | A0A6P3F9N6_OCTDE | girdin isoform X9 | Ccdc88a | 1,844 | Annotation score: | ||
A0A6P6EIL4 | A0A6P6EIL4_OCTDE | girdin isoform X2 | Ccdc88a | 2,027 | Annotation score: | ||
A0A6P6EIM0 | A0A6P6EIM0_OCTDE | girdin isoform X7 | Ccdc88a | 1,872 | Annotation score: | ||
A0A6P6EIK5 | A0A6P6EIK5_OCTDE | girdin isoform X4 | Ccdc88a | 2,000 | Annotation score: | ||
A0A6P6EIM8 | A0A6P6EIM8_OCTDE | girdin isoform X3 | Ccdc88a | 2,001 | Annotation score: | ||
A0A6P6EJD1 | A0A6P6EJD1_OCTDE | girdin isoform X6 | Ccdc88a | 1,933 | Annotation score: | ||
A0A6P6EJH8 | A0A6P6EJH8_OCTDE | girdin isoform X5 | Ccdc88a | 2,000 | Annotation score: |
Sequence databases
RefSeqi | XP_023572163.1, XM_023716395.1 |
Similar proteinsi
Cross-referencesi
Sequence databases
RefSeqi | XP_023572163.1, XM_023716395.1 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Phylogenomic databases
OMAi | LNNQCEX |
Family and domain databases
Gene3Di | 1.10.418.10, 1 hit |
InterProi | View protein in InterPro IPR001715, CH-domain IPR036872, CH_dom_sf IPR027717, Girdin IPR043936, HOOK_N |
PANTHERi | PTHR18947:SF30, PTHR18947:SF30, 1 hit |
Pfami | View protein in Pfam PF19047, HOOK_N, 1 hit |
PROSITEi | View protein in PROSITE PS50021, CH, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | A0A6P6EJC6_OCTDE | |
Accessioni | A0A6P6EJC6Primary (citable) accession number: A0A6P6EJC6 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | December 2, 2020 |
Last sequence update: | December 2, 2020 | |
Last modified: | January 19, 2022 | |
This is version 6 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |