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UniProtKB - A0A5J4NVG0 (A0A5J4NVG0_9TREM)

Entry version 4 (07 Oct 2020)
Sequence version 1 (11 Dec 2019)
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Protein

Rod_C domain-containing protein

Gene

DEA37_0006939

Organism
Paragonimus westermani
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Rod_C domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:DEA37_0006939Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiParagonimus westermaniImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri34504 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Spiralia › Lophotrochozoa › Platyhelminthes › Trematoda › Digenea › Plagiorchiida › Troglotremata › Troglotrematidae › Paragonimus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000324629 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1853 – 2009Rod_CInterPro annotationAdd BLAST157

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni811 – 830DisorderedSequence analysisAdd BLAST20

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR019527, RZZ-complex_KNTC1/ROD_C

Pfam protein domain database

More...Pfami		View protein in Pfam
PF10493, Rod_C, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Fragment.

A0A5J4NVG0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
VSAHASDSCK TEKFALLLAA ERLMYWPNLE SFLLKSALVN QDSECLFSLL 
        60         70         80         90        100
RGAINYPDSD GSYPVFIYHT ALNWTLQLSA PVPMLYALST GLVFSESVFT 
       110        120        130        140        150
PFDCSASDQI VFSKAFFINP VYCVALSTTG RLYLFNLVAV LCLGVLDQFP 
       160        170        180        190        200
QLIDFCVCIS ETDQVQYSPD EEYPGLPPFR FVFLRKPNEN DPPPANPDLD 
       210        220        230        240        250
WTQNILLEVV AFPSGDVLHQ LTVGTQTWLL STENSGALAV ENRPFTDCVL 
       260        270        280        290        300
FAELTSNTVD KDSQLVSIKA LQTISPEQRI RRLLKEHRFD EARHVLAEFN 
       310        320        330        340        350
LKSVLCQEVA LIQLRWYLSE GFATPAQSSA ESKQDHFKAP SVEQGYQLLV 
       360        370        380        390        400
CLREIEEIWL HVDLLTQLLD VIMPTSDLQM DLLLLLKEKL CSSSRTQNLP 
       410        420        430        440        450
PEEPISQVFK RLKRLKTFLL LYGANRFSVL AWTGFMHTDI YVMFIRLLVN 
       460        470        480        490        500
SNDCGPHCDE ISLPSDPSKA FLVWDLYKGE LLDLLTSANL ERLCNLLAQR 
       510        520        530        540        550
PLTYTVEDCE SKSDYRRNFV AAETILYRWL RSELLPAVVR KCPDALSVIV 
       560        570        580        590        600
QFVVQRISQL ESCWSRCSSV AHTVSQFSSS EICPFDWPAS ALSWADALLT 
       610        620        630        640        650
AASVDTSELL FPTIGDQVDR FMSGLASLDP EVDPMVSLRR LAKQLQTIDS 
       660        670        680        690        700
LYRVYGLRLS LDCFDEEDEL SIAYRILDIA FNSGIPFVDG IDPTTARYLK 
       710        720        730        740        750
DRRVDLQAFY LGYTLDLISK VQAIVHLPTQ DGSLFEQWHQ QSPQRRLPVT 
       760        770        780        790        800
RTVLFGKDLH TILQQVCLVA GWIELPLCRL RVVAKLASVL PPPWPTELFR 
       810        820        830        840        850
LADETLAHAR QNGLIPGPPS DPAKPSRRST NSIRVRELFR LQRLTSVARV 
       860        870        880        890        900
QAILLRYNIE DFQLIGTCCE NSSELAQLAI CRMIMTNAEG SVRSYTDLES 
       910        920        930        940        950
TTVIEDASFV ARELLNRPDW RIWFSRLHVV LALELAMSAD SEKNSAMVDV 
       960        970        980        990       1000
DNRVAFVLSQ LDVIVKNCLA DSVDICRLIK HYLSAVALQW TDIALESRQC 
      1010       1020       1030       1040       1050
LTSSQSLFLE TLGICVAQLM TLDFKTPEHV TKTIDSMRLY RWLHSRDLSL 
      1060       1070       1080       1090       1100
LHSDRRVSMP VHSSRWLLSA SLSERVFVAG FLSDWFLGQQ PIPTITALMD 
      1110       1120       1130       1140       1150
IPVTIKPLYR LCLPELSMNV REDLLAWNWY SSVLKVLVNC AELSDSPNRL 
      1160       1170       1180       1190       1200
MQLEAVLRTL VASVVRKFIK IVEAAHVPSL TLLSLLSDCS VLDRPGCFEE 
      1210       1220       1230       1240       1250
LKAQRSHTRL VVSSRQQSQA DGSLFAHTSC TICSTLWSTS LGCGGALLQL 
      1260       1270       1280       1290       1300
WCSHTFPQLL TSLDDASDNR WLQSWLRVVI SCFEHFVELW HWAGRPQPAE 
      1310       1320       1330       1340       1350
HLTVTGITSC AFSSQAATLQ FEGLRETILA YVAHLHVLMH ALSNLQLPST 
      1360       1370       1380       1390       1400
SVESDVLAKW TFTPMFLETG KAGPIDSIVK SLRCSLSWFL RLFLWLLGRN 
      1410       1420       1430       1440       1450
TDVVRQPAAS ETYNSNAKVV EPSLRVVVLK ALLTEATEIA SSWAIDFGQP 
      1460       1470       1480       1490       1500
LTASLPFCFG INRLVSHRSH ISLWTHDPET AVESPCEGVQ DTTDLSSVFR 
      1510       1520       1530       1540       1550
KWYNLCNRWT LAAFEAVLHP VDGGYLDQPL ALSLALACPT DEATCLVHKL 
      1560       1570       1580       1590       1600
VSTSRNAPKK MKALTNLVYA FSLVAPRRAS NLLELSQSMA KTWFWRVSLK 
      1610       1620       1630       1640       1650
PHGLNLSSVA SLIEPSPLQA ALDKLCRIVP SPTQPSAPSS PMGVLLPSAR 
      1660       1670       1680       1690       1700
QASNPFAKSD LSSSKPRPLP SLQLITLFAQ DFNLSLKHSL LHHLKVLFAP 
      1710       1720       1730       1740       1750
GIDIFSLVTP YNQRPSFEPV PPNGDDDTSW LSVVSQKIDV RTYRLYQHVF 
      1760       1770       1780       1790       1800
LRRARHVLKR LVPMYSDSTS TELVTLLNSF VMATSPYDYE RLHFLFTWIS 
      1810       1820       1830       1840       1850
LCEPLAVDTQ NFKLLRLLGS YTRCCQPSDY ECECVSTKSG DQELAFTNAD 
      1860       1870       1880       1890       1900
LQHPLSHLRM PFHMLLKRRP PMDIIGPEVN ANTVTFWLQV NNLMEWKISD 
      1910       1920       1930       1940       1950
SLRLMAASNL VDHFSRAGLL PLISAKKTHG ETVTSTSAGW DRGLLCQNIT 
      1960       1970       1980       1990       2000
STVFKALRGL LLTVTNQTKV LQFLGGLSRR VIYGPHGLAV LEIARDLAEN 
      2010       2020       2030       2040       2050
WLRLADEQAR LAYATEHSGL LDRQLSCPHQ DSGEDVETED LVSQSEIGER 
      2060       2070       2080       2090       2100
VSWCREALQK ADARHRQLAM EACLHQNHLA HWEEVYQHLQ DPVKLMTALL 
      2110       2120       2130       2140       2150
LKVASTDLVD IANPTIPDSK LPVWNQSLRQ RLLRALPRLA ELARVDLREF 
      2160       2170       2180       2190       2200
GCRLLVSKLQ LPSHILTING SSEADANLSN QSFLIDSSLR PNGLHTSDVT 
      2210       2220       2230       2240       2250
LDTTMACGEI GFSAFNNQSS EQHAPPSEED FVLGEILLRI PVVREELLPY 
      2260       2270       2280       2290       2300
LHSFVFTGDM NAYPVSRWCI ARCILRSQLS FVLWPRLSMN ELRAVLLRLA 
      2310       2320       2330       2340       2350
LLAHCSVPAH QRMLLEVSET RISQNETAFT SIPRDRIYTC VQRLLSAEES 
      2360       2370       2380       2390       2400
KRSNATELAG QLVIEFDLTD SQIIAKLLTL LVTNYLSSTR LLYLLRFFEH 
      2410       2420       2430       2440       2450
ISSANPWRSF AWLWSDTFDV RLLSDLVRQL ISAALTAPRV TNRAHLGELL 
      2460       2470       2480       2490       2500
LGRILTTLRS WPFPDEQFES ALAYAASQLF TPMQRLGCTT SDGHVLVASL 
      2510       2520       2530       2540       2550
LNLLASTSCL KPNSVNAFRG IIKTVYSDSE TDQLADALEA SEVYLTASCF 

QTAG
Length:2,554
Mass (Da):286,870
Last modified:December 11, 2019 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC106DE8080B726ED
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section is used for sequence fragments to indicate that the residue at the extremity of the sequence is not the actual terminal residue in the complete protein sequence.<p><a href='/help/non_ter' target='_top'>More...</a></p>Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
QNGE01000821 Genomic DNA Translation: KAA3679180.1

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
QNGE01000821 Genomic DNA Translation: KAA3679180.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Family and domain databases

InterProiView protein in InterPro
IPR019527, RZZ-complex_KNTC1/ROD_C
PfamiView protein in Pfam
PF10493, Rod_C, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A5J4NVG0_9TREM
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A5J4NVG0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: December 11, 2019
Last sequence update: December 11, 2019
Last modified: October 7, 2020
This is version 4 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteomeImported
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