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UniProtKB - A0A5J4NFG7 (A0A5J4NFG7_9TREM)

Entry version 8 (10 Feb 2021)
Sequence version 1 (11 Dec 2019)
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Protein

Reverse transcriptase

Gene

DEA37_0001986

Organism
Paragonimus westermani
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHydrolase, NucleaseARBA annotation, Nucleotidyltransferase, RNA-directed DNA polymeraseARBA annotation, Transferase

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Reverse transcriptaseARBA annotation (EC:2.7.7.49ARBA annotation)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:DEA37_0001986Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiParagonimus westermaniImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri34504 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Spiralia › Lophotrochozoa › Platyhelminthes › Trematoda › Digenea › Plagiorchiida › Troglotremata › Troglotrematidae › Paragonimus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000324629 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini494 – 673Reverse transcriptaseInterPro annotationAdd BLAST180
Domaini1040 – 1200Integrase catalyticInterPro annotationAdd BLAST161

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.40.70.10, 1 hit
3.30.420.10, 1 hit
3.30.70.270, 2 hits

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR001969, Aspartic_peptidase_AS
IPR043502, DNA/RNA_pol_sf
IPR001584, Integrase_cat-core
IPR041588, Integrase_H2C2
IPR021109, Peptidase_aspartic_dom_sf
IPR043128, Rev_trsase/Diguanyl_cyclase
IPR012337, RNaseH-like_sf
IPR036397, RNaseH_sf
IPR000477, RT_dom
IPR041373, RT_RNaseH

Pfam protein domain database

More...Pfami		View protein in Pfam
PF17921, Integrase_H2C2, 1 hit
PF17917, RT_RNaseH, 1 hit
PF00665, rve, 1 hit
PF00078, RVT_1, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF50630, SSF50630, 1 hit
SSF53098, SSF53098, 1 hit
SSF56672, SSF56672, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS00141, ASP_PROTEASE, 1 hit
PS50994, INTEGRASE, 1 hit
PS50878, RT_POL, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A5J4NFG7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSGKEDLSPP CVKSTYAQPT VVENRGEFRP SLKQPHVFHP DDDFESWEFA 
        60         70         80         90        100
VTIYLTGVPE NSMGPYILSF LSEEAAKMFR TTGVRPTAPA AVIWETLRQL 
       110        120        130        140        150
FEKIELPAVY RETFFSRRQE PEESVDRFLR VLRELASKAF KHLSSVECER 
       160        170        180        190        200
NICERFCMGL RNRELRNKFI LKPAESLSVA LTKARGCEAL EQLDEKRAAK 
       210        220        230        240        250
DSICLAFRQH SLTPEPLPRR NQLAVPVGGE CWYCKRFGRR AQHCGHNPPI 
       260        270        280        290        300
GSRSPKGESL TLHEALSSVI SPKCVYMKPL SVRGRINKEP ILFLVDTGAS 
       310        320        330        340        350
CSLIHSRLAA RLTKHRTAPA NPVRLLAANG TEMQVASFLS ASVQLGSFSG 
       360        370        380        390        400
EHQFLACPHL QWKAILGMDF LGHFGGVLNL KDSQMTIGSC LVDLEKGRPA 
       410        420        430        440        450
DACSAVDSKA EVPFVSEVLN HLKSDESLLP MKTQLIHLLS EFKDVFALGN 
       460        470        480        490        500
DAPGRTNWVQ HEIDTSDHRP IRHAPRRLPV HYEQHLDTMI TDMLEKRIIR 
       510        520        530        540        550
PSVSPWSSPI VLVRKKNGTL RLCVDYRKLN EITARDSFPI PRIDATLDAL 
       560        570        580        590        600
HGAQWFSALD LASGYWQVEV RPSDRGKTAF VVPSGLYEFE TMPFGLANAP 
       610        620        630        640        650
ATFQRLMQKA LQGLVPSQCL IYLDDIIVYG RTVAEHNNNL RDVLERLRST 
       660        670        680        690        700
GLKLKGSKCH FLQREVTFLG HVIAADGIKT DPAKSEQIKN WPRPQTVENV 
       710        720        730        740        750
RSFLGLASYY RKFIQGFAEI ATPLHRLTEK GRPFTWSDEC SASFETLKDK 
       760        770        780        790        800
LTTPPILAFP DVSDEAGKFV LDTDASNVSI GAVLSQETPE GEVVIAYASR 
       810        820        830        840        850
CLDKCERNYS TTRRELLALI HFLRHFRPYL LGKPFKVRTD HQSLQWLRNF 
       860        870        880        890        900
RDPEGQVARW QERLQEYDFV CEYRRGLRHG NADALSRVTV PSEVNTTLLY 
       910        920        930        940        950
DADTVWAEDQ LSDSYIANIY KRQADGSSKP SAIEMRQKPF DERALWGHWK 
       960        970        980        990       1000
DLRLIDGVLY RMDQSGPKLI TPKLKVAAVL QKIHTELGHA GQLKTEAAIR 
      1010       1020       1030       1040       1050
QRYWWPGIHA DVVTQCSSCE TCSAIKNHTP GPRAPLEPVV TEHPGQRVGV 
      1060       1070       1080       1090       1100
DIMGPLPVTR RGNRYILVLV DYFTKWSEAV PIERQDACTV AAAIINEWIA 
      1110       1120       1130       1140       1150
RYGAPTMLHS DQGAAFESQL LKETCHLLGI KKTRTTPYHP QGNGLVERTN 
      1160       1170       1180       1190       1200
RTIKALLQSF LERHQADRWD ELLPRCMLAY RASIHTTTRY TPAYLTFGRE 
      1210       1220       1230       1240       1250
LRLPLELLSP IPPLEALSLP DYVRNLRENL RTAFTMAQGH MKDAQRRQKE 
      1260       1270       1280       1290       1300
QYDQHISGPV YSVGCRVWLH RPKAGVGEPA KLHRQWQGPY EVVFVRSPTV 
      1310       1320       1330       1340       1350
YVIRDPQSAS SDVLTPARCG LLDVPSRLVD VFRQELEHPH LRLYNPPQCV 

PGIRLRIHS
Length:1,359
Mass (Da):153,888
Last modified:December 11, 2019 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i0995B979E5F33E77
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
QNGE01003334 Genomic DNA Translation: KAA3674184.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
QNGE01003334 Genomic DNA Translation: KAA3674184.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Family and domain databases

Gene3Di2.40.70.10, 1 hit
3.30.420.10, 1 hit
3.30.70.270, 2 hits
InterProiView protein in InterPro
IPR001969, Aspartic_peptidase_AS
IPR043502, DNA/RNA_pol_sf
IPR001584, Integrase_cat-core
IPR041588, Integrase_H2C2
IPR021109, Peptidase_aspartic_dom_sf
IPR043128, Rev_trsase/Diguanyl_cyclase
IPR012337, RNaseH-like_sf
IPR036397, RNaseH_sf
IPR000477, RT_dom
IPR041373, RT_RNaseH
PfamiView protein in Pfam
PF17921, Integrase_H2C2, 1 hit
PF17917, RT_RNaseH, 1 hit
PF00665, rve, 1 hit
PF00078, RVT_1, 1 hit
SUPFAMiSSF50630, SSF50630, 1 hit
SSF53098, SSF53098, 1 hit
SSF56672, SSF56672, 1 hit
PROSITEiView protein in PROSITE
PS00141, ASP_PROTEASE, 1 hit
PS50994, INTEGRASE, 1 hit
PS50878, RT_POL, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A5J4NFG7_9TREM
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A5J4NFG7
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: December 11, 2019
Last sequence update: December 11, 2019
Last modified: February 10, 2021
This is version 8 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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Main funding by: National Institutes of Health

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