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Entry version 4 (02 Jun 2021)
Sequence version 1 (16 Oct 2019)
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Protein
Submitted name:

PthA1AT

Gene

pthA1AT

Organism
Xanthomonas citri pv. citri
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
PthA1ATImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:pthA1ATImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiXanthomonas citri pv. citriImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri611301 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 68DisorderedSequence analysisAdd BLAST68
Regioni128 – 152DisorderedSequence analysisAdd BLAST25
Regioni1179 – 1217DisorderedSequence analysisAdd BLAST39

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1179 – 1204Basic and acidic residuesSequence analysisAdd BLAST26

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR005042, TAL_effector_rpt

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF03377, TAL_effector, 18 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A514YLQ5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDPIRSRTPS PARELLPGPQ PDGVQPTADR GVSPPAGGPL DGLPARRTIS
60 70 80 90 100
RTRLPSPPAP SPAFSAGSFS DLLRQFDPSL FNTSLFDSLP PFGAHHTEAA
110 120 130 140 150
TGEWDEVQSG LRAADAPPPT MRVAVTAARP PRAKPAPRRR AAQPSDASPA
160 170 180 190 200
AQVDLRTLGY SQQQQEKIKP KVRSTVAQHH EALVGHGFTH AHIVALSQHP
210 220 230 240 250
AALGTVAVKY QDMIAALPEA THEAIVGVGK QWSGARALEA LLTVAGELRG
260 270 280 290 300
PPLQLDTGQL LKIAKRGGVT AVEAVYAWRN ALTGAPLNLT PEQVVAIASN
310 320 330 340 350
IGGKQALETV QRLLPVLCQA HGLTPDQVVA IASNGGKQAL ETVQRLLPVL
360 370 380 390 400
CQAHGLTPAQ VVAIASNIGG KQALETVQRL LPVLCQAHGL TPAQVVAIAS
410 420 430 440 450
NGGKQALETV QRLLPVLCQA HGLTPAQVVA IASNIGGKQA LETVQRLLPV
460 470 480 490 500
LCQAHGLTPE QVVAIASHDG GKQALETVQR LLPVLCQAHG LTPEQVVAIA
510 520 530 540 550
SHDGGKQALE TVQRLLPVLC QAHGLTPEQV VAIASNGGKQ ALETVQRLLP
560 570 580 590 600
VLCQAHGLTP AQVVAIASNI GGKQALETVQ RLLPVLCQAH GLTPEQVVAI
610 620 630 640 650
ASHDGGKQAL ETVQRLLPVL CQAHGLTPEQ VVAIASNIGG KQALETVQRL
660 670 680 690 700
LPVLCQAHGL TPEQVVAIAS HDGGKQALET VQRLLPVLCQ AHGLTPEQVV
710 720 730 740 750
AIASNIGGKQ ALETVQRLLP VLCQAHGLTP EQVVAIASHD GGKQALETVQ
760 770 780 790 800
RLLPVLCQAH GLTPAQVVAI ASNGGKQALE TVQRLLPVLC QAHGLTPAQV
810 820 830 840 850
VAIASNIGGK QALETVQRLL PVLCQAHGLT PEQVVAIASH DGGKQALETV
860 870 880 890 900
QRLLPVLCQA HGLTPEQVVA IASNGGKQAL ETVQRLLPVL CQAHGLTPAQ
910 920 930 940 950
VVAIASNIGG KQALETVQRL LPVLCQAHGL TPEQVVAIAS HDGGKQALET
960 970 980 990 1000
VQRLLPVLCQ AHGLTPEQVV AIASHDGGKQ ALETVQRLLP VLCQAHGLTP
1010 1020 1030 1040 1050
EQVVAIASNG GGRPALESIV AQLSRPDPAL AALTNDHLVA LACLGGRPAL
1060 1070 1080 1090 1100
DAVKKGLPHA PALIKRTNRR IPERTSHRVA DHAQVVRVLG FFQCHSHPAQ
1110 1120 1130 1140 1150
AFDDAMTQFG MSRHGLLQLF RRVGVTELEA RSGTLPPASQ RWDRILQASG
1160 1170 1180 1190 1200
MKRAKPSPTS TQTPDQASLH AFADSLERDL DAPSPTHEGD QRRASSRKRS
1210 1220 1230 1240 1250
RSDRAVTGPS AQQSFEVRVP EQRDALHLPL SWRVKRPRTS IGGGLPDPGT
1260 1270 1280 1290
PTAADLAASS TVMREQDEDP FAGAADDFPA FNEEELAWLM ELLPQ
Length:1,295
Mass (Da):136,148
Last modified:October 16, 2019 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i9B4B33F6A7E9A82E
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
MK425208 Genomic DNA Translation: QDK59942.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
MK425208 Genomic DNA Translation: QDK59942.1

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Family and domain databases

InterProiView protein in InterPro
IPR005042, TAL_effector_rpt
PfamiView protein in Pfam
PF03377, TAL_effector, 18 hits

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A514YLQ5_XANCI
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A514YLQ5
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 16, 2019
Last sequence update: October 16, 2019
Last modified: June 2, 2021
This is version 4 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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