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Entry version 8 (10 Feb 2021)
Sequence version 1 (18 Sep 2019)
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Protein
Submitted name:

Ycf2

Gene

ycf2

Organism
Frullania nodulosa
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Ycf2Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ycf2Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlastid; ChloroplastImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiFrullania nodulosaImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri642337 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaMarchantiophytaJungermanniopsidaJungermanniidaePorellalesJubulineaeFrullaniaceaeFrullania

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei72 – 91HelicalSequence analysisAdd BLAST20
Transmembranei1048 – 1069HelicalSequence analysisAdd BLAST22

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

ChloroplastImported, Membrane, Plastid

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1262 – 1407ATPase_AAA_coreInterPro annotationAdd BLAST146

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR003959, ATPase_AAA_core
IPR027417, P-loop_NTPase

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00004, AAA, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540, SSF52540, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A4Y5P6B3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKQKLPEKKS SYKNLYLGER HENEILSNSL AKYSLSRLLI AIFFDVKNLI
60 70 80 90 100
HLFDFRIVTL SRDLRNSRNK KIFVINTLML FVLPVFISIS HSTCLTVVEQ
110 120 130 140 150
KNMDLTNFKG KNHRKTNFMG IYIKYFQNLN KNFGNFPHNF FIMGDIEKQS
160 170 180 190 200
KKAFLKNIPP IFFKKIIFEK NSFEKEKNDS ISELFFSKNF FTFYACAKEI
210 220 230 240 250
INRDSFKLRK KILQNLRNWG EPDRVLIQSI FLSKEKRFSN YMKKRLWQFS
260 270 280 290 300
KKNFQGLEHA RQKTSTEKKL KSFFCSELNN PELFITLEND LSDSIFKFSK
310 320 330 340 350
YLSYEADKFY DNHIINTNFF TKKLNTDFYI DPISIFIDEK VKKNQKFFHY
360 370 380 390 400
GFFEAFLIDN FNQNISFKKD FSKILKNRVK IQYLKKNVES DDTAIISWKI
410 420 430 440 450
RKSYSNFLFT YFLPLNIAYN MIRQNYSINK KILNTYQKES NQIFFKSFHF
460 470 480 490 500
LSPSLFKFQK FFLFVNQINL EEHLVEKNNE FNFLLDNFNE KKYPKFVDKF
510 520 530 540 550
LFLSILNPKI DSKNTSSLLI DNTIHTKLFN FYNSIQKPLK KLLNNIYLKK
560 570 580 590 600
KLFFDSEKIY IIHTFLIPCK RNIKKSFIWS IGNIGYNKLI LQIYESFNQI
610 620 630 640 650
NNLKIFQNSK KYVPDDFFIK MESPEIFQIF SRKPNSEYVQ KISNYLRVFF
660 670 680 690 700
NISNKKDVEQ VQLFNKFHKS FINQILITNF NSNEKYMKNF IPDSWITEMG
710 720 730 740 750
SEICINFLNK SFLFQNSLES IQRKKLFYNE LVVFNLEKLY IEKSSSIFLQ
760 770 780 790 800
YLKNFFKYKK IKPIIEIKSL FLRKKIIQLS QLRLTNFLLP KSSYENSNKT
810 820 830 840 850
FVFSLSNFYK KLLKRLNNFS LSISSKHSAK QKINKIKTIS YYQFLRKNFS
860 870 880 890 900
IEINSKQIVR SYFVPQLKKT KIENYHNILR YEFLKKSEKR NSEIFQLINN
910 920 930 940 950
IFLYPRSIFF KLKNLEYKAV NKILKKTEKF YKYNQLEISS FFTKNLSFKN
960 970 980 990 1000
SNYTLWFFTS EWWEYNIHIF IETFRKIFLI IGYHLEYFID YYIKVIQKNL
1010 1020 1030 1040 1050
LSFCEKRKNL YNLSLKKNSR LFLNYREKIS NFIWPDFQIL NNWKNLNWAV
1060 1070 1080 1090 1100
FSLIVFIYLF YKNFFAILIG SDLFDLWKYF EIIKYLTDTS RAFYLTKLMH
1110 1120 1130 1140 1150
RNNAQSNKTE NFIIHFFSNL KYYVRNFQFF LLTKKKLTKL LKKNKSLDLS
1160 1170 1180 1190 1200
RRKRNLLVQS LITHTRITDY GFQPYIKQKL LTNGFFYWGD NQQGISYFQY
1210 1220 1230 1240 1250
LIWILRKNLI NYPLYLADKW IFFASVQKIL SSQTLWQIKR LNPRFQKIPV
1260 1270 1280 1290 1300
PLQFGLSCSK GILLIGPVET GRSYLIKNLA ADSSVPLLGI YINKLLYNKP
1310 1320 1330 1340 1350
DVITESWVNI LIESLRRLNL TLDLAKGMSP CIIWIRNLHQ LDVNRSTENI
1360 1370 1380 1390 1400
ESDPTFLLGI LLKHFQLESI KSKTKKNIII IGSTHLPKKV DPSLISPDRL
1410 1420 1430 1440 1450
ERIINIRFFN MSQRKNLFPI LLSKKNIKLK KSLLHFTYFE SRTMGYNMRD
1460 1470 1480 1490 1500
LAALTNEISL INLTKNESFT STDTIKLAFH RQIFGFTHTN NKPNFQRNFK
1510 1520 1530 1540 1550
IVLYKIGRAV IQNILIEGSA ANPLNISNYL WKRKFYYLSK WYSEPSTDSS
1560 1570 1580 1590 1600
IVKESTIIVY VLSCLAGVAA RDSWFFSKEN RDSSIPLDKS VENDLDLAFS
1610 1620 1630 1640 1650
ILENFSVEFP WLETCKTRFF NYKQKRSEIF STKNFLSIMQ NGIFAIANRS
1660 1670 1680 1690 1700
FTYSHKNSEY ESLISRHNIL EKISCELKET AWSPRFWRLS FSRSYLFDWI
1710 1720 1730 1740 1750
KRPNDFEFLQ NLEKKNHYKK SLDKEKEQIL YERILPRVRK RNVQELESQF
1760 1770 1780 1790 1800
EEILLEERFE ILGSFYPSTQ YHMEYQLNKK PRFFIGKRIL WDPTGSFSRI
1810 1820 1830 1840 1850
HHFVFSRREF FVDEEMLRRL YITYGVRRER ERSLSSHRIK RFFIFRGYNK
1860 1870 1880 1890 1900
DLINKLSIRW WNQLLPMDQK QNIYTLKHIE NIGIQLKRPQ IFTPVYLYQR
1910 1920 1930 1940 1950
WLIENIPEKF SRLKLFTHRD RWIKMNHLLL NDSFTYTTLL ESYQYLFEFF
1960 1970 1980
LSNKKLLNRI IKILLKKKWI FQNEIGEIIN DIKKY
Length:1,985
Mass (Da):239,458
Last modified:September 18, 2019 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i3C467890D5E0F1F4
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
MH064510 Genomic DNA Translation: QCW58831.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
MH064510 Genomic DNA Translation: QCW58831.1

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Family and domain databases

InterProiView protein in InterPro
IPR003959, ATPase_AAA_core
IPR027417, P-loop_NTPase
PfamiView protein in Pfam
PF00004, AAA, 1 hit
SUPFAMiSSF52540, SSF52540, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A4Y5P6B3_9MARC
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A4Y5P6B3
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: September 18, 2019
Last sequence update: September 18, 2019
Last modified: February 10, 2021
This is version 8 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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