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Entry version 8 (29 Sep 2021)
Sequence version 1 (08 May 2019)
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Protein

DNA-directed DNA polymerase

Gene
N/A
Organism
Hemigrapsus takanoi nimavirus
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-directed DNA polymeraseARBA annotation, Nucleotidyltransferase, Transferase
Biological processDNA replication, Viral DNA replicationARBA annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
DNA-directed DNA polymeraseARBA annotation (EC:2.7.7.7ARBA annotation)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHemigrapsus takanoi nimavirusImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri2133792 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiVirusesNaldaviricetesNimaviridaeunclassified Nimaviridae

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini653 – 710DNA_pol_B_exo1InterPro annotationAdd BLAST58
Domaini935 – 982DNA_pol_BInterPro annotationAdd BLAST48
Domaini1231 – 1463DNA_pol_BInterPro annotationAdd BLAST233

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1297 – 1324DisorderedSequence analysisAdd BLAST28

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the DNA polymerase type-B family.ARBA annotation

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.90.1600.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR006172, DNA-dir_DNA_pol_B
IPR017964, DNA-dir_DNA_pol_B_CS
IPR006133, DNA-dir_DNA_pol_B_exonuc
IPR006134, DNA-dir_DNA_pol_B_multi_dom
IPR043502, DNA/RNA_pol_sf
IPR023211, DNA_pol_palm_dom_sf
IPR012337, RNaseH-like_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00136, DNA_pol_B, 2 hits
PF03104, DNA_pol_B_exo1, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00486, POLBc, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF53098, SSF53098, 1 hit
SSF56672, SSF56672, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00116, DNA_POLYMERASE_B, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A401IP34-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFFFTRCGSF NPTTGEAVIY SVNSKSRQRV NSETDLEYLG VITAVSDAIV
60 70 80 90 100
SDYSIANPKY KGIVDVNKNI VSFSDRSADV CVKIDSLLIR PSDAIEWIVR
110 120 130 140 150
RSAVDLKRHY TRFLNNPTEN ASLFKEALNA NVQTASTVGV TLRTDDDDKR
160 170 180 190 200
YTFYNKKASM GFNMFNSHPL SIEAHTDADV MILMAIFLKQ NSLWHNKGGL
210 220 230 240 250
MYDQFDYAKM FFRRNKATDT PFFAYELASC IPVREAEDKD NGNKKKRKAV
260 270 280 290 300
VEEAANKSLS NFEAANKLIG LQSASRRCKH NSTASCIDLY SGVKQPYCVS
310 320 330 340 350
CFCSMFFVAS GTVRFKDKKG LQEWIDEANE RSADGRLVEH LNALSSVECS
360 370 380 390 400
SKIEHDYKFW NLINSLDIRR KKLLPAMDTG LLFANMNPFG KMLLVMMQNC
410 420 430 440 450
FIVTEKGKVE GKWFDLDYMG PNLWKVQITS YREEKFDTFV DMACVETLRR
460 470 480 490 500
LPMEGEPILS RMVFKTYCRG ENLSSAYEVV SDVAQTINNM RMNIEGRNFF
510 520 530 540 550
FENSKLCSSA EASDEVLLSL EVTGYKPNRA QNSMNSNRVS ARVMRILGSR
560 570 580 590 600
EGARVWKKRD AEKEDCILIE DLSPSNENAS YEAMERMSNL NKIFYYDIET
610 620 630 640 650
NTNKCSASDA IITSICGSLC TGGDVNGGER VIFALAAGVK PEELVRCIRE
660 670 680 690 700
EYSCQGDMIT DYPPEKIYAF STEYELLLAF SEYMREAKPH VFCGWNSKSF
710 720 730 740 750
DDPFVFYRMV HYLRNDKNPK KRVALASNNG LFNFEPFMTT KEGHGEPVLC
760 770 780 790 800
EAFYGDASAA AAAHDNMSYM DHQRRKGQGG GGIDINAILG GCCKTVRLDM
810 820 830 840 850
KEVCAKAYEN LAEYNLNAVL VKVSRVGDKM AILKDPIDIA KQLLGYLSLK
860 870 880 890 900
TAKEQAPVHK YCSKDAYVVG IVDISTNKGG EMRRLCYDSM LIESVVTANM
910 920 930 940 950
PTPLCISDGA ICRSMGQNRA LKRGSGIRKH SMSTETKGGM VSQPIVESVC
960 970 980 990 1000
LQTVDMSSLY PSTMCQYNLC TSTFVTHMQV INLRDRVAMK YLASDGADDV
1010 1020 1030 1040 1050
LDAVDRANVY VLDRYRPIDI VVKSWRIDST DRVRRTQLEK KLNVFWDETK
1060 1070 1080 1090 1100
NDGSHREWCR DKPPSFSITA AGMEYFPEYG CSLDLQRAAN VNDDMHINPS
1110 1120 1130 1140 1150
DLEYMVPALV VMALEDAGLA AHVTCGTCTT TEGLLAMLEA DFDRETDEKI
1160 1170 1180 1190 1200
KERLYSYVGT DSDPDWAADH AFDRIASVVT TVPDHSLAIV DLLDKILRRV
1210 1220 1230 1240 1250
NAFDSTNDEV LKKWAARMIN VGSFVRAWNT KKDVLNGVIP VLQAEYKANR
1260 1270 1280 1290 1300
TVMQQKAKMY AAIDPKKAEF NKVGEKTTKL SMNSIYGCLG LRANQSRKSV
1310 1320 1330 1340 1350
GASTETEGGG REGGAGGGTR HSPTANQITS VSRCVFGNIA CAIQQALPNA
1360 1370 1380 1390 1400
KQVYGDTDSV FCNHNIPGDG GGRSLFVREG DGRLVYRIDT VMKNKIANFL
1410 1420 1430 1440 1450
PLFINAATKG IKFDEKRDAG VPFMKIAHER LAFLVFLFAK KTYHMIHLKE
1460 1470 1480 1490 1500
GSKGSDAILA CKGEESNSID KFTRVIDCPE EYKNYVIAHN PTLILAAAAN
1510 1520 1530 1540 1550
DEKLNGFLRK EGATDRESLK AWFTTSDQWL EMDADTLYSM YASRMLDVDN
1560 1570 1580 1590 1600
GNWIDWRTSR LIERGTELYE GVIQAAEAFI LYRKGAFVKK GIPSSTKLKG
1610 1620 1630 1640 1650
LQSLFIRNLP RSLFDRESEY RNGIEHHVQN CASFEASPFM SITSSRVNKY
1660 1670 1680 1690 1700
KTDEKQKLPN PMAMVLNNHI HPNNPILPAE KFLTVTVASA WAISGDKSHG
1710 1720 1730 1740 1750
SVPTGYFNNK SVKWDAEMMR GLVPGSVVKS LSVVPNTIRT VMEMVRSDAK
1760 1770 1780 1790 1800
NIESVIEECV DTLTTASTGR SGFGLKRRAL CFNTGILCSD TLVRAVLSGK
1810 1820 1830 1840 1850
AAASAWRADG YEEDEATDVV KKDEKTNVEE EEKEEGLIPA AKKSSAKFSL
1860 1870 1880 1890 1900
EKIRERILNC MVYDDVLFNK NVDPNTLDLK GLMCDKLRVD DRVYEQLCNL
1910 1920 1930 1940 1950
TDQLTTSKDM TTKKKVGKER VSALDVMIAA VEIDFDKVVD ICADRMAQHC
1960 1970 1980 1990 2000
KKCPVIIPDD KNDHLFKKVL DLLAGKVKCT ATCVNATCQS LDFVLLCTLA
2010 2020 2030 2040 2050
LREVNRRRRT NEFDVSMADY NTEEMVKVAF GPRFNRELDA VVFLFDEPAA
2060 2070 2080 2090 2100
PMSKARIDKR IRDGASSLTT GAVYNPDDGR FFGGLMDRDG LIEESLLQGG
2110 2120 2130
SVVELPFVTG VYYREAVELA VSRLCENRGL RGLLEK
Length:2,136
Mass (Da):239,077
Last modified:May 8, 2019 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i1DC52406A3F71C73
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
BFCC01000002 Genomic DNA Translation: GBG35384.1

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BFCC01000002 Genomic DNA Translation: GBG35384.1

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Family and domain databases

Gene3Di3.90.1600.10, 2 hits
InterProiView protein in InterPro
IPR006172, DNA-dir_DNA_pol_B
IPR017964, DNA-dir_DNA_pol_B_CS
IPR006133, DNA-dir_DNA_pol_B_exonuc
IPR006134, DNA-dir_DNA_pol_B_multi_dom
IPR043502, DNA/RNA_pol_sf
IPR023211, DNA_pol_palm_dom_sf
IPR012337, RNaseH-like_sf
PfamiView protein in Pfam
PF00136, DNA_pol_B, 2 hits
PF03104, DNA_pol_B_exo1, 1 hit
SMARTiView protein in SMART
SM00486, POLBc, 1 hit
SUPFAMiSSF53098, SSF53098, 1 hit
SSF56672, SSF56672, 1 hit
PROSITEiView protein in PROSITE
PS00116, DNA_POLYMERASE_B, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A401IP34_9VIRU
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A401IP34
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 8, 2019
Last sequence update: May 8, 2019
Last modified: September 29, 2021
This is version 8 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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