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Entry version 5 (11 Dec 2019)
Sequence version 1 (10 Apr 2019)
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Protein

Reverse transcriptase domain-containing protein

Gene

evm_014144

Organism
Chilo suppressalis (Asiatic rice borer moth)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Reverse transcriptase domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:evm_014144Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiChilo suppressalis (Asiatic rice borer moth)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri168631 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraHolometabolaLepidopteraGlossataDitrysiaPyraloideaCrambidaeCrambinaeChilo
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000283053 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1129 – 1399Reverse transcriptaseInterPro annotationAdd BLAST271

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 163DisorderedSequence analysisAdd BLAST163
Regioni177 – 215DisorderedSequence analysisAdd BLAST39
Regioni408 – 649DisorderedSequence analysisAdd BLAST242
Regioni1503 – 1523DisorderedSequence analysisAdd BLAST21

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili908 – 928Sequence analysisAdd BLAST21

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi27 – 42Pro-richSequence analysisAdd BLAST16
Compositional biasi43 – 57PolarSequence analysisAdd BLAST15
Compositional biasi75 – 100PolyampholyteSequence analysisAdd BLAST26
Compositional biasi101 – 117Pro-richSequence analysisAdd BLAST17
Compositional biasi130 – 148PolarSequence analysisAdd BLAST19
Compositional biasi177 – 198PolarSequence analysisAdd BLAST22
Compositional biasi419 – 460PolarSequence analysisAdd BLAST42
Compositional biasi461 – 482PolyampholyteSequence analysisAdd BLAST22
Compositional biasi494 – 508Pro-richSequence analysisAdd BLAST15
Compositional biasi531 – 577PolarSequence analysisAdd BLAST47
Compositional biasi598 – 612PolarSequence analysisAdd BLAST15
Compositional biasi619 – 633PolyampholyteSequence analysisAdd BLAST15

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.60.10.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR036691 Endo/exonu/phosph_ase_sf
IPR005135 Endo/exonuclease/phosphatase
IPR000477 RT_dom

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF14529 Exo_endo_phos_2, 1 hit
PF00078 RVT_1, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF56219 SSF56219, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50878 RT_POL, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Fragment.

A0A3S2NJ07-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPPKPLPPGK PPDTKSARAA ATAAPALPPA PMAPPPVRQP PSRQATSTPN
60 70 80 90 100
PGSAAACRSA TTELPRPCSA PVTAHPRDPR RRQLDEDDVI GGDEKRPRHG
110 120 130 140 150
PSPPQPNPIP PATPGTSGTY VPPKRRQPAS PSASEESDAE SSSSEISYEG
160 170 180 190 200
GIEGLYGPLP PHTDADYTAS TAYFNINQPD ESQGSQMQSY AQAASQPSPP
210 220 230 240 250
RSPHTPPVNK QSDRGYPPIV VEKLPNWPTH FAEIKRLLGH TPNARPFKAG
260 270 280 290 300
VRFTPKSDNE FRSIQRYLVA ASEQNSEITW FCYAPQEDKP IKVAIRGIPA
310 320 330 340 350
DTNPQQITET LEERGFPVTY VRSIRGKRGR PGCIFHAQLD HMPREELARL
360 370 380 390 400
YATDELLGMP GVIIEAWRPR AGPAQCHRCQ AFGHNSANCH RPKKCLRCAG
410 420 430 440 450
DHAAADFGTK DEPESSTSHP WRKQPAAVNE TYPTYSPPER GSTRDPTRTN
460 470 480 490 500
TGPTSKPSDS KECTRLIEKE KEKRKKEATS GRTAGSDSHP SHTLPLCPPY
510 520 530 540 550
PVGFSPRGRP PVHPSYLSHI PPLEGRTPAD GTSPSPPSSN NGCSTPASEA
560 570 580 590 600
HRPTPTSNPY STPSGPINQA DPQTGVPTPP STTNPAKDPA RGYPRPASAR
610 620 630 640 650
TTTASPPTNT ATPAHVDRGL HTESPHGGHR QGNRSHTGDN GSPDLAAPGG
660 670 680 690 700
YQHKALRILY WNPGGIRKHI DELRLLSTEQ DAHIILLGET LLSDKHKLKI
710 720 730 740 750
PNFTTYRRDE ATPDGTPFRG TAALVRRDLV HEELPWLPFK STRTIGIRTK
760 770 780 790 800
AGDKDLKVYA AYKPPQTQVQ ETDMDAIFCD DVPTILAGDL NCKHSAWGSL
810 820 830 840 850
KTNHEGRKLL SLSESRNFEA VGPPDATHIP SDPLRSPDTI DIVLHKNISS
860 870 880 890 900
PISVEVLYST STQHLPLLIC LNLDPNVVPP SPPRFKTDWE AYTRELEEYK
910 920 930 940 950
LPYPLTTKQE IDANINHLVQ AMKDAKERHT SRTSTQRRDP LPLALKQKMA
960 970 980 990 1000
EKRRIKKLWA TTRCPRTKTR LNQLTAEVAT GVKQWRGDSW SATIDRATES
1010 1020 1030 1040 1050
KPGLYKLLRG LTKQAQPVCP LLDECDRSRY AALDRATIFA NHLQAQFTPH
1060 1070 1080 1090 1100
PAAQEAADFH QNIEDEARAF LSAAHPQLPG DVFISPTEVR KIAIRLNPKK
1110 1120 1130 1140 1150
APGPDSLPST ALAALPRRGV AAWTQIFNAA LRAKYFPGAW KTGRVIMIPK
1160 1170 1180 1190 1200
PGKDRRRPGN YRPITLLDHV GKLFERLILR RLQPHYKPRE EQYGFRSGHS
1210 1220 1230 1240 1250
TVLQLSRLLH HMAEAQNKGH CTVAVFLDVE KAFDRVWHPG LILKLSKSAV
1260 1270 1280 1290 1300
HPGLTMLIAS YLESRSFRVT VEGVESPIHP VEAGVPQGSV LSPALYTIYT
1310 1320 1330 1340 1350
DDLPSINEDL QQWESRVNLA LFADDCAFFT SAAWPKAAAM RMQKQLAKLP
1360 1370 1380 1390 1400
QWLKQWRVSV NVSKTAAICS TYKRPPPKLT LDGHQIEWAS STKYLGVTID
1410 1420 1430 1440 1450
KNIRMVAHAE EAITKSRKAR AALRPILTSN LPLRTKVQKK RIQKQQNAAL
1460 1470 1480 1490 1500
RILTGAGRYV RNDVIARDLK IETVEEFVSR LARAMFSRAD QGPYLHLQGL
1510 1520 1530 1540 1550
APINSASSPG PGRHRRAPRP TPRSLFSRKI QVSLSIFRLL QLDGSLFIPL
1560 1570 1580 1590 1600
IGVDDAGLYE CGVENETSFL DRINLTVRTE PPPLVNVTVH ASTILALILW
1610 1620 1630 1640
NVAGDGGHPI IDFTAEYRSA APVNGSLEPW RPISPNHISP NS
Length:1,642
Mass (Da):180,976
Last modified:April 10, 2019 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iA8BA3161FCA973CF
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section is used for sequence fragments to indicate that the residue at the extremity of the sequence is not the actual terminal residue in the complete protein sequence.<p><a href='/help/non_ter' target='_top'>More...</a></p>Non-terminal residuei1642Imported1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
RSAL01000708 Genomic DNA Translation: RVE41206.1

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
RSAL01000708 Genomic DNA Translation: RVE41206.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Family and domain databases

Gene3Di3.60.10.10, 1 hit
InterProiView protein in InterPro
IPR036691 Endo/exonu/phosph_ase_sf
IPR005135 Endo/exonuclease/phosphatase
IPR000477 RT_dom
PfamiView protein in Pfam
PF14529 Exo_endo_phos_2, 1 hit
PF00078 RVT_1, 1 hit
SUPFAMiSSF56219 SSF56219, 1 hit
PROSITEiView protein in PROSITE
PS50878 RT_POL, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A3S2NJ07_CHISP
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A3S2NJ07
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: April 10, 2019
Last sequence update: April 10, 2019
Last modified: December 11, 2019
This is version 5 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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