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UniProtKB - A0A3Q7JHK3 (A0A3Q7JHK3_SOLLC)

Entry version 10 (02 Dec 2020)
Sequence version 1 (10 Apr 2019)
Previous versions | rss
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Protein

Pectinesterase

Gene
N/A
Organism
Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
Status
Unreviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section describes the metabolic pathway(s) associated with a protein.<p><a href='/help/pathway' target='_top'>More...</a></p>Pathwayi: pectin degradation

This protein is involved in step 1 of the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin.ARBA annotation
Proteins known to be involved in the 5 steps of the subpathway in this organism are:
  1. Pectinesterase, Pectinesterase (101261415), Pectinesterase, Pectinesterase (101244818), Pectinesterase (101246061), Pectinesterase 2.1 (PME2.1), Pectinesterase, Pectinesterase (PMEU1), Pectinesterase (101248642), Pectinesterase, Pectinesterase 2.2 (PME2.2), Pectinesterase (101258375), Pectinesterase (LePME1), Pectinesterase 3 (PME3), Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase 1 (PME1.9), Pectinesterase (101255775), Pectinesterase (101260091), Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase (101260282), Pectinesterase (101244677), Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase (101261269), Pectinesterase (101248083), Pectinesterase, Pectinesterase, Pectinesterase (101260787), Pectinesterase, Pectinesterase (101253120), Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase (101260795), Methionine aminopeptidase, Pectinesterase, Pectinesterase, Pectinesterase (101268391), Pectinesterase (101247796), Pectinesterase/pectinesterase inhibitor U1 (PMEU1), Pectinesterase (101260941), Pectinesterase (101260585), Pectinesterase (101247960), Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase (101266668), Pectinesterase (101262904), Pectinesterase (101261266), Pectinesterase, Pectinesterase (101268168), Pectinesterase (101244375), Pectinesterase, Pectinesterase, Pectinesterase (101261743), Pectinesterase (101257682), Pectinesterase, Pectinesterase (109119119), Pectinesterase (101245713), Pectinesterase, Pectinesterase, Pectinesterase (101264501), Pectinesterase (101266973), Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase
  2. Pectate lyase (778293), Probable pectate lyase P18 (9612), Pectate lyase, Pectate lyase (101257960), Pectate lyase, Pectate lyase, Pectate lyase (101257697), Pectate lyase (101246909), Probable pectate lyase P59 (LAT59), Probable pectate lyase P56 (LAT56), Pectate lyase, Pectate lyase (101260096), Pectate lyase, Pectate lyase (101250914), Pectate lyase (101264933), Pectate lyase (101263458), Pectate lyase (101249735), Pectate lyase, Pectate lyase (101252082), Pectate lyase (101254639), Pectate lyase, Pectate lyase, Pectate lyase (101260911), Pectate lyase (101253459)
  3. no protein annotated in this organism
  4. no protein annotated in this organism
  5. no protein annotated in this organism
This subpathway is part of the pathway pectin degradation, which is itself part of Glycan metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin, the pathway pectin degradation and in Glycan metabolism.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionAspartyl esteraseARBA annotation, Hydrolase, TransferaseARBA annotation
Biological processCell wall biogenesis/degradationARBA annotation
LigandMetal-binding, Zinc

Enzyme and pathway databases

UniPathway: a resource for the exploration and annotation of metabolic pathways

More...UniPathwayi		UPA00545;UER00823

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
PectinesteraseARBA annotation (EC:3.1.1.11ARBA annotation)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSolanum lycopersicum (Tomato) (Lycopersicon esculentum)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri4081 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › asterids › lamiids › Solanales › Solanaceae › Solanoideae › Solaneae › Solanum › Solanum subgen. Lycopersicon
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000004994 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 11

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei44 – 61HelicalSequence analysisAdd BLAST18

Keywords - Cellular componenti

Membrane, SecretedARBA annotation

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini608 – 758PMEIInterPro annotationAdd BLAST151

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1278 – 1300DisorderedSequence analysisAdd BLAST23
Regioni1522 – 1546DisorderedSequence analysisAdd BLAST25
Regioni1562 – 1590DisorderedSequence analysisAdd BLAST29

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1279 – 1298PolarSequence analysisAdd BLAST20
Compositional biasi1522 – 1544PolarSequence analysisAdd BLAST23

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

In the C-terminal section; belongs to the pectinesterase family.ARBA annotation
In the N-terminal section; belongs to the PMEI family.ARBA annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis, Zinc-fingerARBA annotation

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.20.140.40, 1 hit
2.160.20.10, 1 hit
3.90.550.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR002495, Glyco_trans_8
IPR035513, Invertase/methylesterase_inhib
IPR029044, Nucleotide-diphossugar_trans
IPR012334, Pectin_lyas_fold
IPR011050, Pectin_lyase_fold/virulence
IPR000070, Pectinesterase_cat
IPR006501, Pectinesterase_inhib_dom
IPR019786, Zinc_finger_PHD-type_CS
IPR011011, Znf_FYVE_PHD

Pfam protein domain database

More...Pfami		View protein in Pfam
PF01501, Glyco_transf_8, 1 hit
PF01095, Pectinesterase, 1 hit
PF04043, PMEI, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00856, PMEI, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF101148, SSF101148, 1 hit
SSF51126, SSF51126, 1 hit
SSF53448, SSF53448, 1 hit
SSF57903, SSF57903, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR01614, PME_inhib, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS01359, ZF_PHD_1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A3Q7JHK3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEARRSIEDA CKRRLQKIKV KDVGGIKPLQ NPFQEKNTNC KFHPLKLVLF 
        60         70         80         90        100
IIVIGTFYMI LSSPSVCQHN NADTVSRQHF VNRWIWGASD PRYISDIDIS 
       110        120        130        140        150
WEEVSQVLEQ LPNQNKVVDN IGLLNFNKDE ISEWTQVVPN VNQTVLHLDY 
       160        170        180        190        200
VEKNVTWDTL YPEWIDEEQE NEVPSCPTFP KLEVPRTRFD LIAVKLPCRN 
       210        220        230        240        250
EGNWSRDVAR LHLQLAAAGL ASSAKGIHPV HLLFITKCFP IPNLYRCNEL 
       260        270        280        290        300
VARKGNAWLY KPDLSVLREK VQLPVGSCEL ALPFGTTEEV HSGNKRREAY 
       310        320        330        340        350
ATILHSAHVY VCGAIAAAQS IRMSGSTRDL VILVDESIGE YHRSGLEAAG 
       360        370        380        390        400
WQVRTIQRIR NPKAEKDAYN EWNYSKFRLW QLTDYDKIIF IDADLLILRN 
       410        420        430        440        450
IDILFRMPQI SATGNNGTLF NSGVMVIEPS NCTFQLLMDH INEIESYNGG 
       460        470        480        490        500
DQGYLNEIFT WWHRIPKHMN FLKNFWIGDD EVVKAKKTNL FGADPPVLYV 
       510        520        530        540        550
LHYLGYKPWL CFRDYDCNWN VDILQEFASD VAHHKWWRVH DAMPEQLQDF 
       560        570        580        590        600
CLLRSKQKAQ LEWDRREAEK AKYVDGHWKM KINDRRLKRC TDRLCNWKAT 
       610        620        630        640        650
PISFPPSPSP IEIQLACKAS PDPPTCESAL TESSHIPSNL TALQIILSAL 
       660        670        680        690        700
SVSSHNLTNA QSMVKNLLDS AAAGDVNLTG AAKNCLQGLG NSVYRYNLTA 
       710        720        730        740        750
AALPRGEIKD ARAWMSASLG YQIGCSSNLL RVNGTLPVAK TLEVIKGLIG 
       760        770        780        790        800
FTTNALWMMV NYDIHGNKTG SWAPPKTERN GFWEVVSGSG SRFRGGVPSG 
       810        820        830        840        850
LSPNVTVCKD GSCNYKMVQE AVNATPDNLG SEKFVIRIKT GLYDEIIRIP 
       860        870        880        890        900
LEKRNVVFLG DGMGKTVISG SLSVGQTPGM STYESATVGV TGDGFMASGL 
       910        920        930        940        950
TIQNAAGIGA GQAVAFRSDS DHSVIENCEF LGNQDTLYTQ SLRQYYKSCR 
       960        970        980        990       1000
IQGNVDFIFG NAAAIFQDCE ILVTPRVVNP EKGETNAVTA HGRLDPGQST 
      1010       1020       1030       1040       1050
GFVFQNCSIN GTKEYMILYR SNPNVHKNYL GRPWKEYSRT VFLNCNLEVL 
      1060       1070       1080       1090       1100
IRPEGWMPWS GEVALATLYY GEYKSSGNGG NVTGRVPWSN QIPTEHEIVC 
      1110       1120       1130       1140       1150
LTCGDKGDVK LLVYCSQCRD SAVHHYCQEK ITVDDDYADW ICWDCAPKVA 
      1160       1170       1180       1190       1200
KDDQVRKSER ISERLNRAFD VRAEWRRKLY HCKVKALRLD EARHDTSGEV 
      1210       1220       1230       1240       1250
QSPTAHSPFH VLQKEKPSFV DTKKHKDIGE ECADVCYSEQ HIEIVKAGIT 
      1260       1270       1280       1290       1300
PLVGKRQEAY CSTLNNEEGG MIERAQVRGD SSVQDSKSAQ SLGEIGKQQE 
      1310       1320       1330       1340       1350
MRKSSRKFVV CDDDGDFEGE GGAIGGTFSS SFPGEQNFPL DTLYGDPQVE 
      1360       1370       1380       1390       1400
SVNCLSAEPV IDPIWRGCLI FNTESQSSIN ILAHLSNKAC EKACIAATRL 
      1410       1420       1430       1440       1450
PVNLDVKLVS KNDVWPRSFQ RLQPTDCSIA VYLFPELEED ENSYDALLED 
      1460       1470       1480       1490       1500
VIENDLAMSA TIDDVELLIF SSCVLPQKHW RLRRKYYLWG VFKHKPSRSR 
      1510       1520       1530       1540       1550
IPTCNILAQT SSIQNAATSD LPNEVEGAHT GSSQQDQSFP SPLSIEKGVD 
      1560       1570       1580       1590       1600
SGSPLGRFPS PLSIVKGVDS GSPPGRFPSP LSIVKGVDSA SPPGCFPSPL 
      1610 
SSCCDITSTK DSPCHHEN
Length:1,618
Mass (Da):180,763
Last modified:April 10, 2019 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i5DBE439257E6A3A0
GO

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		Solyc11g005760.2.1; Solyc11g005760.2.1; Solyc11g005760.2

Gramene; a comparative resource for plants

More...Gramenei		Solyc11g005760.2.1; Solyc11g005760.2.1; Solyc11g005760.2

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

EnsemblPlantsiSolyc11g005760.2.1; Solyc11g005760.2.1; Solyc11g005760.2
GrameneiSolyc11g005760.2.1; Solyc11g005760.2.1; Solyc11g005760.2

Enzyme and pathway databases

UniPathwayiUPA00545;UER00823

Family and domain databases

Gene3Di1.20.140.40, 1 hit
2.160.20.10, 1 hit
3.90.550.10, 1 hit
InterProiView protein in InterPro
IPR002495, Glyco_trans_8
IPR035513, Invertase/methylesterase_inhib
IPR029044, Nucleotide-diphossugar_trans
IPR012334, Pectin_lyas_fold
IPR011050, Pectin_lyase_fold/virulence
IPR000070, Pectinesterase_cat
IPR006501, Pectinesterase_inhib_dom
IPR019786, Zinc_finger_PHD-type_CS
IPR011011, Znf_FYVE_PHD
PfamiView protein in Pfam
PF01501, Glyco_transf_8, 1 hit
PF01095, Pectinesterase, 1 hit
PF04043, PMEI, 1 hit
SMARTiView protein in SMART
SM00856, PMEI, 1 hit
SUPFAMiSSF101148, SSF101148, 1 hit
SSF51126, SSF51126, 1 hit
SSF53448, SSF53448, 1 hit
SSF57903, SSF57903, 1 hit
TIGRFAMsiTIGR01614, PME_inhib, 1 hit
PROSITEiView protein in PROSITE
PS01359, ZF_PHD_1, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A3Q7JHK3_SOLLC
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A3Q7JHK3
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: April 10, 2019
Last sequence update: April 10, 2019
Last modified: December 2, 2020
This is version 10 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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