Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Entry version 5 (31 Jul 2019)
Sequence version 1 (10 Oct 2018)
Previous versions | rss
Help videoAdd a publicationFeedback
Protein
Submitted name:

sister chromatid cohesion protein PDS5 homolog A isoform X4

Gene

PDS5A

Organism
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
sister chromatid cohesion protein PDS5 homolog A isoform X4Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:PDS5AImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiNeophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1706337 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaCetaceaOdontocetiPhocoenidaeNeophocaena
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000252040 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome assembly

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1151 – 1365DisorderedSequence analysisAdd BLAST215

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1161 – 1203PolarSequence analysisAdd BLAST43
Compositional biasi1220 – 1238PolarSequence analysisAdd BLAST19
Compositional biasi1252 – 1281PolyampholyteSequence analysisAdd BLAST30
Compositional biasi1351 – 1365PolarSequence analysisAdd BLAST15

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.10.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011989 ARM-like
IPR016024 ARM-type_fold
IPR039776 Pds5

The PANTHER Classification System

More...
PANTHERi
PTHR12663 PTHR12663, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48371 SSF48371, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A341AE53-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDFSTAQPKP APALCGVVSA DGKIAYPPGV KEITDKITTD EMIKRLKMVV
60 70 80 90 100
KTFMDMDQDS EDEKQQYLPL ALHLASEFFL RNPNKDVRLL VACCLADIFR
110 120 130 140 150
IYAPEAPYTS HDKLKDIFLF ITRQLKGLED TKSPQFNRYF YLLENLAWVK
160 170 180 190 200
SYNICFELED CNEIFIQLFR TLFSVINNSH NKKVQMHMLD LMSSIIMEGD
210 220 230 240 250
GVTQELLDSI LINLIPAHKN LNKQSFDLAK VLLKRTVQTI EACIANFFNQ
260 270 280 290 300
VLVLGRSSVS DLSEHVFDLI QELFAIDPHL LLSVMPQLEF KLKSNDGEER
310 320 330 340 350
LAVVRLLAKL FGSKDSDLAT QNRPLWQCFL GRFNDIHVPV RLESVKFASH
360 370 380 390 400
CLMNHPDLAK DLTEYLKVRS HDPEEAIRHD VIVTIITAAK RDLALVNDQL
410 420 430 440 450
LGFVRERTLD KRWRVRKEAM MGLAQLYKKY CLHGEAGKEA AEKVSWIKDK
460 470 480 490 500
LLHIYYQNSI DDKLLVEKIF AQYLVPHNLE TEERMKCLYY LYASLDPNAV
510 520 530 540 550
KALNEMWKCQ NMLRSHVREL LDLHKQPTSE ANCSAMFGKL MTIAKNLPDP
560 570 580 590 600
GKAQDFVKKF NQVLGDDEKL RSQLELLISP TCSCKQADVC VREIARKLAN
610 620 630 640 650
PKQPTNPFLE MVKFLLERIA PVHIDSEAIS ALVKLMNKSI EGTADDEEEG
660 670 680 690 700
VSPDTAIRSG LELLKVLSFT HPTSFHSAET YESLLQCLRM EDDKVAEAAI
710 720 730 740 750
QIFRNTGHKI ETDLPQIRST LIPILHQKAK RGTPHQAKQA VHCIHAIFTN
760 770 780 790 800
KEVQLAQIFE PLSRSLNADV PEQLITPLVS LGHISMLAPD QFASPMKSVV
810 820 830 840 850
ANFIVKDLLM NDRSTGEKNG KLWSPDEEVS PEVLAKVQAI KLLVRWLLGM
860 870 880 890 900
KNNQSKSANS TLRLLSAMLV SEGDLTEQKK ISKSDMSRLR LAAGSAIMKL
910 920 930 940 950
AQEPCYHEII TPEQFQLCAL VINDECYQVR QIFAQKLHKA LVKLLLPLEY
960 970 980 990 1000
MAIFALCAKD PVKERRAHAR QCLLKNISIR REYIKQNPMA TEKLLSLLPE
1010 1020 1030 1040 1050
YVVPYMIHLL AHDPDFTRSQ DVDQLRDIKE CLWFMLEVLM TKNENNSHAF
1060 1070 1080 1090 1100
MKKMAENIKL TKDAQSPDES KTNEKLYTVC DVALCVINSK SALCNADSPK
1110 1120 1130 1140 1150
DPVLPMKFFT QPEKDFCNDK SYISEETRVL LLTGKPKPAG VLGAVNKPLS
1160 1170 1180 1190 1200
ATGRKPYVRS TGAETGSNIN VNSELNPSTG NRSREQSSEA AETGVSENEE
1210 1220 1230 1240 1250
NPVRIISVTP VKNIDPVKNK EINSDQAAQG NISSDRGKKR TVTAAGAENI
1260 1270 1280 1290 1300
QQKTDEKVDE SGPPAPSKPR RGRRPKSESQ GNATRNDDIN KPLSKGRKRA
1310 1320 1330 1340 1350
AVNQESPGGL EAGNAKAPKL QDIAKKAAPA ERQIDLQRSQ VLGSDGDSLW
1360 1370 1380 1390 1400
DIESSPGNSS SDLDRLKVCE SSQEDTEDSE LVEGSFLKVQ QAACRGFFDI
1410
ILLNFIYYNK LI
Length:1,412
Mass (Da):159,047
Last modified:October 10, 2018 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iCCB3E480A24B58F7
GO

Sequence databases

NCBI Reference Sequences

More...
RefSeqi
XP_024587407.1, XM_024731639.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

RefSeqiXP_024587407.1, XM_024731639.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Family and domain databases

Gene3Di1.25.10.10, 1 hit
InterProiView protein in InterPro
IPR011989 ARM-like
IPR016024 ARM-type_fold
IPR039776 Pds5
PANTHERiPTHR12663 PTHR12663, 1 hit
SUPFAMiSSF48371 SSF48371, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A341AE53_9CETA
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A341AE53
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 10, 2018
Last sequence update: October 10, 2018
Last modified: July 31, 2019
This is version 5 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again