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Entry version 6 (31 Jul 2019)
Sequence version 1 (10 Oct 2018)
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Protein
Submitted name:

Protein far1-related sequence 6

Gene

FRS6_1

Organism
Nicotiana attenuata (Coyote tobacco)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Protein far1-related sequence 6Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:FRS6_1Imported
ORF Names:A4A49_50672Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiNicotiana attenuata (Coyote tobacco)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri49451 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeNicotianoideaeNicotianeaeNicotiana
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000187609 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini532 – 568SWIM-typeInterPro annotationAdd BLAST37
Domaini1214 – 1250SWIM-typeInterPro annotationAdd BLAST37

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 22DisorderedSequence analysisAdd BLAST22

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR004330 FAR1_DNA_bnd_dom
IPR031052 FHY3/FAR1
IPR018289 MULE_transposase_dom
IPR006564 Znf_PMZ
IPR007527 Znf_SWIM

The PANTHER Classification System

More...
PANTHERi
PTHR31669 PTHR31669, 3 hits

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF03101 FAR1, 2 hits
PF10551 MULE, 2 hits
PF04434 SWIM, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00575 ZnF_PMZ, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50966 ZF_SWIM, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A314LFP0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEEGLGTSEQ LPEDDGSNNE VDSEEAFDIT CNGDQVLNVE ADELEATTGQ
60 70 80 90 100
ILEFESHEAE KSCEHVLDFE SSDPRDNSHQ LLEFHSNGLG GGNTTIIDDH
110 120 130 140 150
TGSSPGKFYP PPVVGMEFES YEDAYNYYNC YAKELGFAIR VKSSWTKRNS
160 170 180 190 200
KEKRGAVLCC NCEGFKTMKE ANSRRKETRT GCLAMIRLRL VESSRWRVDD
210 220 230 240 250
VKLEHNHLFD PERVQNSKSH KKMDAGVKRK LEPAVDVEVR TIKLYRTPAV
260 270 280 290 300
ETLGYGSLDE RAFGGQIDGS TRLKLKEGDT QVIYNFFCRV QLTKPNFFYI
310 320 330 340 350
MDLNDEGYLK NVFWIDPRSR AAYAYFGDVV VVDTTCLSKK YDIPLLAFFG
360 370 380 390 400
LNHHKQTLLL GCGLLADESF ETYVWLLRAW LSCMSGRPPQ TIITDRCMAL
410 420 430 440 450
QNAISEVFPR AQHRLNLSII LGSIFNTVGQ VGESEVFHEV LYSTVYNSVK
460 470 480 490 500
VDEFEVAWEE MIHQFGFRGY GWLQSLYEDR ERWAPIYMKD SFFAGISIDQ
510 520 530 540 550
PGIAQIHPNA PIITYIVKER GAQGDTGDAR DFEVTYDKIG VEVRCICSCF
560 570 580 590 600
NFKGYLCRHA LSVLNYNGIE EIPNHYILTR WRKDFKRLYA PELGSSNIDV
610 620 630 640 650
SNPVQRFDHL HKWAMQVVDE GMTSQDHYMV AWQAFKESLN KTRGTQPITA
660 670 680 690 700
GSGSEIDVDG STTFQMDGLS LNAEPIFDDE TEEFEIDGEC AMTEYVGQSG
710 720 730 740 750
VIEGENPVPP AFGMEFETYE DVYYFYNCYA KVHGFGVRVS NTWYRKSRER
760 770 780 790 800
YRGKLSCSSA GFKKKSEANR PRPETRTGCP AMIKFRLMEN KRWRIIEVEL
810 820 830 840 850
EHNHLVSPST EKFYKSHRNI SSGSKRSLQM DANQDIQKIR LFRTVIIDPD
860 870 880 890 900
DVRKLNIDEG EFRNTIVQSN NHLILKPGDA QAFHSFFIDL QLVNPDFFYV
910 920 930 940 950
MDLNEKGCLR NVFWAEARFK AAYSYFGDVV RIDTACLTTK YEIPLVVIAG
960 970 980 990 1000
VNHHGQSVPL GCGLVAGETV ESFIWLLRAW LTCMVGRPPQ TIITDQSRVM
1010 1020 1030 1040 1050
QTAIADVLPR SSYCFSLSHI MKKVPEELGG LHEYEVIKKA FTKAIYQSSR
1060 1070 1080 1090 1100
AEEFEAAWED MILCHGIRDH KWLQTLHDNR KHWAPVYLKD TFLAGMVSVT
1110 1120 1130 1140 1150
LSEKEASPFD EYLANHTPLK EFLNSYNQCL KEIYQREALA DTESRNSSFM
1160 1170 1180 1190 1200
LKSRFYFEMQ LSKVYTNHIF EKFQIEVEGM FSCLSTRQVS IDGSIVTYIV
1210 1220 1230 1240 1250
KEHEVENVNE AKDYEVTLNT AVAEVLCACG LFNLEGFLCR HALCVLSQNS
1260 1270 1280 1290 1300
FEEIPPQYIL SRWRKDIHRS YVLDYGCNLI DTKNPVHRYD NLYKCAVKLV
1310 1320 1330
EEGRKSNERY KFTLEALGEI LNKVSLQDHN TL
Length:1,332
Mass (Da):152,678
Last modified:October 10, 2018 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i6E0A15A5F9F38527
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
MJEQ01000029 Genomic DNA Translation: OIT40383.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
OIT40383; OIT40383; A4A49_50672

Gramene; a comparative resource for plants

More...
Gramenei
OIT40383; OIT40383; A4A49_50672

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
MJEQ01000029 Genomic DNA Translation: OIT40383.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOIT40383; OIT40383; A4A49_50672
GrameneiOIT40383; OIT40383; A4A49_50672

Family and domain databases

InterProiView protein in InterPro
IPR004330 FAR1_DNA_bnd_dom
IPR031052 FHY3/FAR1
IPR018289 MULE_transposase_dom
IPR006564 Znf_PMZ
IPR007527 Znf_SWIM
PANTHERiPTHR31669 PTHR31669, 3 hits
PfamiView protein in Pfam
PF03101 FAR1, 2 hits
PF10551 MULE, 2 hits
PF04434 SWIM, 2 hits
SMARTiView protein in SMART
SM00575 ZnF_PMZ, 2 hits
PROSITEiView protein in PROSITE
PS50966 ZF_SWIM, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A314LFP0_NICAT
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A314LFP0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 10, 2018
Last sequence update: October 10, 2018
Last modified: July 31, 2019
This is version 6 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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