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UniProtKB - A0A2V3DKB3 (A0A2V3DKB3_PSEAI)

Entry version 23 (07 Apr 2021)
Sequence version 1 (12 Sep 2018)
Previous versions | rss
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Protein

Nucleoid-associated protein C0044_11470

Gene

ybaB

Organism
Pseudomonas aeruginosa
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.UniRule annotation

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-bindingUniRule annotationImported

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Nucleoid-associated protein C0044_11470UniRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:ybaBImported
ORF Names:C0044_11470Imported, CAZ10_35805Imported, CGU42_25565Imported, CSB93_5092Imported, DT376_22285Imported, DY940_07490Imported, DZ962_30620Imported, E4V10_21855Imported, ECC04_021055Imported, F7O94_26875Imported, IPC1164_24345Imported, IPC116_20465Imported, IPC1295_04370Imported, IPC1323_12500Imported, IPC1481_02240Imported, IPC1505_19810Imported, IPC1509_13400Imported, IPC151_12950Imported, IPC36_02370Imported, IPC582_01970Imported, IPC620_14235Imported, IPC669_05955Imported, IPC737_11970Imported, NCTC12924_05774Imported, NCTC13621_01536Imported, NCTC13628_04692Imported, PA52Ts2_2575Imported, PAMH19_4870Imported, RW109_RW109_04631Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPseudomonas aeruginosaImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri287 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000043988 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence
  • UP000297623 Componenti: Unassembled WGS sequence
  • UP000253594 Componenti: Unassembled WGS sequence
  • UP000502341 Componenti: Chromosome
  • UP000348842 Componenti: Unassembled WGS sequence
  • UP000258262 Componenti: Unassembled WGS sequence
  • UP000194857 Componenti: Unassembled WGS sequence
  • UP000297361 Componenti: Unassembled WGS sequence
  • UP000298413 Componenti: Unassembled WGS sequence
  • UP000344659 Componenti: Unassembled WGS sequence
  • UP000297560 Componenti: Unassembled WGS sequence
  • UP000276985 Componenti: Unassembled WGS sequence
  • UP000233777 Componenti: Chromosome mainomosome
  • UP000247072 Componenti: Unassembled WGS sequence
  • UP000286578 Componenti: Unassembled WGS sequence
  • UP000238390 Componenti: Chromosome
  • UP000284767 Componenti: Unassembled WGS sequence
  • UP000356665 Componenti: Unassembled WGS sequence
  • UP000278438 Componenti: Unassembled WGS sequence
  • UP000297925 Componenti: Unassembled WGS sequence
  • UP000480944 Componenti: Unassembled WGS sequence
  • UP000297232 Componenti: Unassembled WGS sequence
  • UP000297845 Componenti: Unassembled WGS sequence
  • UP000297376 Componenti: Unassembled WGS sequence
  • UP000285404 Componenti: Unassembled WGS sequence
  • UP000297499 Componenti: Unassembled WGS sequence
  • UP000297579 Componenti: Unassembled WGS sequence
  • UP000284878 Componenti: Unassembled WGS sequence
  • UP000216659 Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

CytoplasmUniRule annotation

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homodimer.

UniRule annotation

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 25DisorderedSequence analysisAdd BLAST25
Regioni87 – 108DisorderedSequence analysisAdd BLAST22

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the YbaB/EbfC family.UniRule annotation

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		3.30.1310.10, 1 hit

HAMAP database of protein families

More...HAMAPi		MF_00274, DNA_YbaB_EbfC, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR036894, YbaB-like_sf
IPR004401, YbaB/EbfC

The PANTHER Classification System

More...PANTHERi		PTHR33449, PTHR33449, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF02575, YbaB_DNA_bd, 1 hit

PIRSF; a whole-protein classification database

More...PIRSFi		PIRSF004555, UCP004555, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF82607, SSF82607, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR00103, DNA_YbaB_EbfC, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A2V3DKB3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MMKGGMAGLM KQAQQMQEKM QKMQEELANA EVTGQSGAGL VSVVMTGRHD 
        60         70         80         90        100
VKRVSLDDSL MQEDKEILED LIAAAVNDAV RKIEQNNQEK MSGFTSGMQL 

PPGFKMPF
Length:108
Mass (Da):11,877
Last modified:September 12, 2018 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i6E0E82F71BEE99D7
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CP027169 Genomic DNA Translation: AVK05862.1
CDAZ01000016 Genomic DNA Translation: CEI19359.1
VZIR01000188 Genomic DNA Translation: KAB0740759.1
NFFZ01000036 Genomic DNA Translation: OTI54940.1
NMRQ01000050 Genomic DNA Translation: OZO14524.1
QHLU01000884 Genomic DNA Translation: PXB99367.1
CP051768 Genomic DNA Translation: QJE83978.1
QORE01000849 Genomic DNA Translation: RCI72707.1
QVBL01000072 Genomic DNA Translation: RFJ65173.1
NSNE01000002 Genomic DNA Translation: RPM21503.1
NSOX01000017 Genomic DNA Translation: RPP31541.1
NSTV01000004 Genomic DNA Translation: RPW74500.1
NSVB01000002 Genomic DNA Translation: RPY77888.1
RXTL01000010 Genomic DNA Translation: RTS49516.1
LT969520 Genomic DNA Translation: SOV30510.1
RWMN01000008 Genomic DNA Translation: TEE17999.1
RWMJ01000004 Genomic DNA Translation: TEE26003.1
RWNG01000001 Genomic DNA Translation: TEF49476.1
RWOM01000004 Genomic DNA Translation: TEH35693.1
RWPP01000004 Genomic DNA Translation: TEJ18578.1
RWQP01000001 Genomic DNA Translation: TEK65588.1
RWSC01000005 Genomic DNA Translation: TEM89639.1
RWTJ01000008 Genomic DNA Translation: TEO90881.1
RWUZ01000001 Genomic DNA Translation: TER59089.1
SRHR01000034 Genomic DNA Translation: TGA86998.1
RHMD02000002 Genomic DNA Translation: TGB21821.1
CAADJP010000006 Genomic DNA Translation: VFT11645.1
CAADJR010000002 Genomic DNA Translation: VFT54781.1
CABDUZ010000003 Genomic DNA Translation: VTM19193.1

NCBI Reference Sequences

More...RefSeqi		WP_003087236.1, NZ_WYAF01000021.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		AVK05862; AVK05862; CSB93_5092
CEI19359; CEI19359; PAMH19_4870
OTI54940; OTI54940; CAZ10_35805
OZO14524; OZO14524; CGU42_25565
PXB99367; PXB99367; C0044_11470
RCI72707; RCI72707; DT376_22285
RFJ65173; RFJ65173; DZ962_30620
SOV30510; SOV30510; RW109_RW109_04631

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|287.1477.peg.4639

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP027169 Genomic DNA Translation: AVK05862.1
CDAZ01000016 Genomic DNA Translation: CEI19359.1
VZIR01000188 Genomic DNA Translation: KAB0740759.1
NFFZ01000036 Genomic DNA Translation: OTI54940.1
NMRQ01000050 Genomic DNA Translation: OZO14524.1
QHLU01000884 Genomic DNA Translation: PXB99367.1
CP051768 Genomic DNA Translation: QJE83978.1
QORE01000849 Genomic DNA Translation: RCI72707.1
QVBL01000072 Genomic DNA Translation: RFJ65173.1
NSNE01000002 Genomic DNA Translation: RPM21503.1
NSOX01000017 Genomic DNA Translation: RPP31541.1
NSTV01000004 Genomic DNA Translation: RPW74500.1
NSVB01000002 Genomic DNA Translation: RPY77888.1
RXTL01000010 Genomic DNA Translation: RTS49516.1
LT969520 Genomic DNA Translation: SOV30510.1
RWMN01000008 Genomic DNA Translation: TEE17999.1
RWMJ01000004 Genomic DNA Translation: TEE26003.1
RWNG01000001 Genomic DNA Translation: TEF49476.1
RWOM01000004 Genomic DNA Translation: TEH35693.1
RWPP01000004 Genomic DNA Translation: TEJ18578.1
RWQP01000001 Genomic DNA Translation: TEK65588.1
RWSC01000005 Genomic DNA Translation: TEM89639.1
RWTJ01000008 Genomic DNA Translation: TEO90881.1
RWUZ01000001 Genomic DNA Translation: TER59089.1
SRHR01000034 Genomic DNA Translation: TGA86998.1
RHMD02000002 Genomic DNA Translation: TGB21821.1
CAADJP010000006 Genomic DNA Translation: VFT11645.1
CAADJR010000002 Genomic DNA Translation: VFT54781.1
CABDUZ010000003 Genomic DNA Translation: VTM19193.1
RefSeqiWP_003087236.1, NZ_WYAF01000021.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiAVK05862; AVK05862; CSB93_5092
CEI19359; CEI19359; PAMH19_4870
OTI54940; OTI54940; CAZ10_35805
OZO14524; OZO14524; CGU42_25565
PXB99367; PXB99367; C0044_11470
RCI72707; RCI72707; DT376_22285
RFJ65173; RFJ65173; DZ962_30620
SOV30510; SOV30510; RW109_RW109_04631
PATRICifig|287.1477.peg.4639

Family and domain databases

Gene3Di3.30.1310.10, 1 hit
HAMAPiMF_00274, DNA_YbaB_EbfC, 1 hit
InterProiView protein in InterPro
IPR036894, YbaB-like_sf
IPR004401, YbaB/EbfC
PANTHERiPTHR33449, PTHR33449, 1 hit
PfamiView protein in Pfam
PF02575, YbaB_DNA_bd, 1 hit
PIRSFiPIRSF004555, UCP004555, 1 hit
SUPFAMiSSF82607, SSF82607, 1 hit
TIGRFAMsiTIGR00103, DNA_YbaB_EbfC, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A2V3DKB3_PSEAI
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A2V3DKB3
Secondary accession number(s): A0A1S1BYW8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: September 12, 2018
Last sequence update: September 12, 2018
Last modified: April 7, 2021
This is version 23 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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