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UniProtKB - A0A2R8Q1T4 (A0A2R8Q1T4_DANRE)
Protein
Xanthine dehydrogenase/oxidase
Gene
xdh
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Functioni
Catalytic activityi
Cofactori
Protein has several cofactor binding sites:- FADUniRule annotationARBA annotation
- Mo-molybdopterinUniRule annotationNote: Binds 1 Mo-molybdopterin (Mo-MPT) cofactor per subunit.UniRule annotation
- [2Fe-2S] clusterUniRule annotationNote: Binds 2 [2Fe-2S] clusters.UniRule annotation
Sites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Metal bindingi | 56 | Iron-sulfur 1UniRule annotation | 1 | |
Metal bindingi | 61 | Iron-sulfur 1UniRule annotation | 1 | |
Metal bindingi | 64 | Iron-sulfur 1UniRule annotation | 1 | |
Metal bindingi | 86 | Iron-sulfur 1UniRule annotation | 1 | |
Metal bindingi | 126 | Iron-sulfur 2UniRule annotation | 1 | |
Metal bindingi | 129 | Iron-sulfur 2UniRule annotation | 1 | |
Metal bindingi | 161 | Iron-sulfur 2UniRule annotation | 1 | |
Metal bindingi | 163 | Iron-sulfur 2UniRule annotation | 1 | |
Binding sitei | 384 | FADUniRule annotation | 1 | |
Binding sitei | 407 | FADUniRule annotation | 1 | |
Binding sitei | 451 | FAD; via amide nitrogen and carbonyl oxygenUniRule annotation | 1 | |
Binding sitei | 469 | FADUniRule annotation | 1 | |
Metal bindingi | 819 | MolybdenumUniRule annotation | 1 | |
Metal bindingi | 850 | Molybdenum; via carbonyl oxygenUniRule annotation | 1 | |
Binding sitei | 854 | SubstrateUniRule annotation | 1 | |
Binding sitei | 932 | SubstrateUniRule annotation | 1 | |
Metal bindingi | 964 | Molybdenum; via amide nitrogenUniRule annotation | 1 | |
Binding sitei | 966 | SubstrateUniRule annotation | 1 | |
Binding sitei | 1062 | Substrate; via amide nitrogenUniRule annotation | 1 | |
Metal bindingi | 1131 | Molybdenum; via amide nitrogenUniRule annotation | 1 | |
Active sitei | 1313 | Proton acceptorUniRule annotation | 1 |
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Nucleotide bindingi | 304 – 311 | FADUniRule annotation | 8 |
GO - Molecular functioni
- 2 iron, 2 sulfur cluster binding Source: UniProtKB-KW
- FAD binding Source: InterPro
- iron ion binding Source: InterPro
- molybdenum ion binding Source: InterPro
- molybdopterin cofactor binding Source: InterPro
- oxidoreductase activity Source: GO_Central
- xanthine dehydrogenase activity Source: GO_Central
- xanthine oxidase activity Source: UniProtKB-EC
GO - Biological processi
- xanthine catabolic process Source: GO_Central
Keywordsi
Molecular function | OxidoreductaseARBA annotation |
Ligand | 2Fe-2SUniRule annotationARBA annotation, FADUniRule annotationARBA annotation, Flavoprotein, Iron, Iron-sulfur, Metal-binding, MolybdenumUniRule annotationARBA annotation |
Enzyme and pathway databases
Reactomei | R-DRE-74259, Purine catabolism |
Names & Taxonomyi
Protein namesi | |
Gene namesi | Name:xdhImported |
Organismi | Danio rerio (Zebrafish) (Brachydanio rerio)Imported |
Taxonomic identifieri | 7955 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Danionidae › Danioninae › Danio |
Proteomesi |
|
Organism-specific databases
ZFINi | ZDB-GENE-070719-9, xdh |
Subcellular locationi
Peroxisome
- Peroxisome ARBA annotation
Extracellular region or secreted
- extracellular space Source: GO_Central
Peroxisome
- peroxisome Source: UniProtKB-SubCell
Keywords - Cellular componenti
PeroxisomeARBA annotationStructurei
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 17 – 104 | 2Fe-2S ferredoxin-typeInterPro annotationAdd BLAST | 88 | |
Domaini | 276 – 461 | FAD-binding PCMH-typeInterPro annotationAdd BLAST | 186 |
Sequence similaritiesi
Belongs to the xanthine dehydrogenase family.ARBA annotation
Phylogenomic databases
GeneTreei | ENSGT00950000183114 |
OMAi | DIGYVWG |
Family and domain databases
CDDi | cd00207, fer2, 1 hit |
Gene3Di | 3.10.20.30, 1 hit 3.30.43.10, 1 hit 3.30.465.10, 1 hit |
InterProi | View protein in InterPro IPR002888, 2Fe-2S-bd IPR036884, 2Fe-2S-bd_dom_sf IPR036010, 2Fe-2S_ferredoxin-like_sf IPR001041, 2Fe-2S_ferredoxin-type IPR006058, 2Fe2S_fd_BS IPR000674, Ald_Oxase/Xan_DH_a/b IPR036856, Ald_Oxase/Xan_DH_a/b_sf IPR016208, Ald_Oxase/xanthine_DH IPR008274, AldOxase/xan_DH_Mopterin-bd IPR037165, AldOxase/xan_DH_Mopterin-bd_sf IPR012675, Beta-grasp_dom_sf IPR005107, CO_DH_flav_C IPR036683, CO_DH_flav_C_dom_sf IPR016166, FAD-bd_PCMH IPR036318, FAD-bd_PCMH-like_sf IPR016167, FAD-bd_PCMH_sub1 IPR016169, FAD-bd_PCMH_sub2 IPR002346, Mopterin_DH_FAD-bd IPR022407, OxRdtase_Mopterin_BS IPR014309, Xanthine_DH_Mopterin-bd_su IPR014307, Xanthine_DH_ssu |
PANTHERi | PTHR11908, PTHR11908, 2 hits |
Pfami | View protein in Pfam PF01315, Ald_Xan_dh_C, 1 hit PF02738, Ald_Xan_dh_C2, 1 hit PF03450, CO_deh_flav_C, 1 hit PF00941, FAD_binding_5, 1 hit PF00111, Fer2, 1 hit PF01799, Fer2_2, 1 hit |
PIRSFi | PIRSF000127, Xanthine_DH, 2 hits |
SMARTi | View protein in SMART SM01008, Ald_Xan_dh_C, 1 hit SM01092, CO_deh_flav_C, 1 hit |
SUPFAMi | SSF47741, SSF47741, 1 hit SSF54292, SSF54292, 1 hit SSF54665, SSF54665, 1 hit SSF55447, SSF55447, 1 hit SSF56003, SSF56003, 1 hit SSF56176, SSF56176, 1 hit |
TIGRFAMsi | TIGR02963, xanthine_xdhA, 1 hit TIGR02965, xanthine_xdhB, 1 hit |
PROSITEi | View protein in PROSITE PS00197, 2FE2S_FER_1, 1 hit PS51085, 2FE2S_FER_2, 1 hit PS51387, FAD_PCMH, 1 hit PS00559, MOLYBDOPTERIN_EUK, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All
A0A2R8Q1T4-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MSISEDKIKN KLQSPGDDLV FFVNGKKITE KNADPEITLL TYLRRSLGLT
60 70 80 90 100
GTKLGCAEGG CGACTVMVSK YHPNQNRIIH YAINACLAPL CSLHHCAVTT
110 120 130 140 150
VEGIGSVASK LHPVQERIAK AHGSQCGFCT PGIVMSMYAL LRNNPQPTMH
160 170 180 190 200
DIQEAFQGNL CRCTGYRPIL EGYRTFTKDG GCCGGKSQTN GCCMTNGNTQ
210 220 230 240 250
EHENSAHPVQ HLYDQSEFMP LDPTQEIIFP PELVVRIRSL IFILDYHSKH
260 270 280 290 300
IYICIFYIYI CSLQSLSKQT QREMRFVGER VLWIQPCSLK ELLELKATYP
310 320 330 340 350
NAKLVVGNTE VGIEMKFKNL LYPVILAPAY IPELNIIQHT QDGIEVGASV
360 370 380 390 400
TLTVLGDVLQ SAVKKLPAYQ TEVFKAVLEQ LRWFAGQQIR NVAAVGGNIM
410 420 430 440 450
TASPISDLNP VFMAAGCKLT VMSKGEKRVL EMDDKFFTGY RKTALKPEEI
460 470 480 490 500
LLSIEIPYTK KGQYFSAFKQ SPRKEDDISI VTCGMNVYFK EQSNTVQSIR
510 520 530 540 550
ISYGGMAPVT VLATATCNKL LNRQWNEDLL EEACSSLAEE MSLSPSAPGG
560 570 580 590 600
MVTYRRTLTI SLFYKFFLTV QHKLAVSLQM EGVTVEDIQP EFSTATELFQ
610 620 630 640 650
VDTPSSVQLY QEVPPGQNED DVVGHPIIHL SALKQATGEA VYCDDMPCYE
660 670 680 690 700
NELHLALVTS TKAHALIKSI DTSSAMSVPG VVAFISAKDI PGSNMTGPVV
710 720 730 740 750
YDETVFADDK VTCVGHIVGA IVADTQAHAQ RAAKVVKISY EELKPVIVTI
760 770 780 790 800
QDAINNKSFF EPVRTIEKGD VAQGFKDSDH ILHGEMHIGG QEQFYLETNC
810 820 830 840 850
TLAVPRGEDG EMELFVSTQS ASKTQALVAK ALGVPANRVV CRVKRMGGGF
860 870 880 890 900
GGKESRSTIL STVVAVAAQK VKCPVRCMLD RDEDMLVTGG RHPFFGQYKV
910 920 930 940 950
GFMKNGRVMA LEVTLYSNAG NSLDLSLSIL ERALFHMDNS YNIPNICGTG
960 970 980 990 1000
YMCKTNLPSN SAFRGFGGPQ GMMIAESWMS DVALSCGLPA EEVRRMNMYN
1010 1020 1030 1040 1050
EGDLTHFNQR LDQFTIARCW EECMQLSDFN KRKDAVEKYN RQHRWTKRGL
1060 1070 1080 1090 1100
SIIPTKFGIS FTAVFLNQAG ALVHVYSDGS VLLTHGGTEM GQGLHTKMVQ
1110 1120 1130 1140 1150
VASKTLEIPC TKIHITETST STVPNTSPTA ASASSDLNGM AVYNACQTIL
1160 1170 1180 1190 1200
QRLQPFKEKN PKGCWEDWVT AAYFDRVNLS ANGFYKTPDL GYDFDTNSGR
1210 1220 1230 1240 1250
PFNYFSYGVA VSEVEIDCLT GSHKNLHTSI VMDVGKSLNP ALDIGQVEGG
1260 1270 1280 1290 1300
FMQGLGLFTL EELRYSPDGY LYTRGPGMYK IPAFGDIPSE LKVSLLRDAP
1310 1320 1330 1340 1350
NDKAIFSSKA VGEPPLFLAA SVFYAIKDAI TAARAESGLT GPFRLDSPAT
1360 1370 1380
PERIRNACED KFTKLCPPAD PGTFIPWAVQ V
Computationally mapped potential isoform sequencesi
There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basketE7F022 | E7F022_DANRE | Xanthine dehydrogenase/oxidase | xdh | 1,351 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | BX323819 Genomic DNA No translation available. |
Genome annotation databases
Ensembli | ENSDART00000184396; ENSDARP00000147093; ENSDARG00000055240 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | BX323819 Genomic DNA No translation available. |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Genome annotation databases
Ensembli | ENSDART00000184396; ENSDARP00000147093; ENSDARG00000055240 |
Organism-specific databases
ZFINi | ZDB-GENE-070719-9, xdh |
Phylogenomic databases
GeneTreei | ENSGT00950000183114 |
OMAi | DIGYVWG |
Enzyme and pathway databases
Reactomei | R-DRE-74259, Purine catabolism |
Gene expression databases
ExpressionAtlasi | A0A2R8Q1T4, baseline |
Family and domain databases
CDDi | cd00207, fer2, 1 hit |
Gene3Di | 3.10.20.30, 1 hit 3.30.43.10, 1 hit 3.30.465.10, 1 hit |
InterProi | View protein in InterPro IPR002888, 2Fe-2S-bd IPR036884, 2Fe-2S-bd_dom_sf IPR036010, 2Fe-2S_ferredoxin-like_sf IPR001041, 2Fe-2S_ferredoxin-type IPR006058, 2Fe2S_fd_BS IPR000674, Ald_Oxase/Xan_DH_a/b IPR036856, Ald_Oxase/Xan_DH_a/b_sf IPR016208, Ald_Oxase/xanthine_DH IPR008274, AldOxase/xan_DH_Mopterin-bd IPR037165, AldOxase/xan_DH_Mopterin-bd_sf IPR012675, Beta-grasp_dom_sf IPR005107, CO_DH_flav_C IPR036683, CO_DH_flav_C_dom_sf IPR016166, FAD-bd_PCMH IPR036318, FAD-bd_PCMH-like_sf IPR016167, FAD-bd_PCMH_sub1 IPR016169, FAD-bd_PCMH_sub2 IPR002346, Mopterin_DH_FAD-bd IPR022407, OxRdtase_Mopterin_BS IPR014309, Xanthine_DH_Mopterin-bd_su IPR014307, Xanthine_DH_ssu |
PANTHERi | PTHR11908, PTHR11908, 2 hits |
Pfami | View protein in Pfam PF01315, Ald_Xan_dh_C, 1 hit PF02738, Ald_Xan_dh_C2, 1 hit PF03450, CO_deh_flav_C, 1 hit PF00941, FAD_binding_5, 1 hit PF00111, Fer2, 1 hit PF01799, Fer2_2, 1 hit |
PIRSFi | PIRSF000127, Xanthine_DH, 2 hits |
SMARTi | View protein in SMART SM01008, Ald_Xan_dh_C, 1 hit SM01092, CO_deh_flav_C, 1 hit |
SUPFAMi | SSF47741, SSF47741, 1 hit SSF54292, SSF54292, 1 hit SSF54665, SSF54665, 1 hit SSF55447, SSF55447, 1 hit SSF56003, SSF56003, 1 hit SSF56176, SSF56176, 1 hit |
TIGRFAMsi | TIGR02963, xanthine_xdhA, 1 hit TIGR02965, xanthine_xdhB, 1 hit |
PROSITEi | View protein in PROSITE PS00197, 2FE2S_FER_1, 1 hit PS51085, 2FE2S_FER_2, 1 hit PS51387, FAD_PCMH, 1 hit PS00559, MOLYBDOPTERIN_EUK, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | A0A2R8Q1T4_DANRE | |
Accessioni | A0A2R8Q1T4Primary (citable) accession number: A0A2R8Q1T4 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | June 20, 2018 |
Last sequence update: | June 20, 2018 | |
Last modified: | January 19, 2022 | |
This is version 17 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |