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Protein

ATP-dependent RNA helicase RhlB

Gene

rhlB

Organism
Yersiniaceae bacterium 2016Iso4
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA.UniRule annotationSAAS annotation

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Catalytic activityi

ATP + H2O = ADP + phosphate.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHelicaseUniRule annotationSAAS annotationImported, Hydrolase, RNA-bindingUniRule annotationSAAS annotation
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ATP-dependent RNA helicase RhlBUniRule annotationSAAS annotation (EC:3.6.4.13UniRule annotationSAAS annotation)
Gene namesi
Name:rhlBUniRule annotation
ORF Names:CYR32_18595Imported
OrganismiYersiniaceae bacterium 2016Iso4Imported
Taxonomic identifieri2060068 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesYersiniaceae
Proteomesi
  • UP000234503 Componenti: Unassembled WGS sequence

Subcellular locationi

  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Component of the RNA degradosome, which is a multiprotein complex involved in RNA processing and mRNA degradation.UniRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 37Q_MOTIFInterPro annotationAdd BLAST29
Domaini40 – 219Helicase ATP-bindingInterPro annotationAdd BLAST180
Domaini245 – 390Helicase C-terminalInterPro annotationAdd BLAST146

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi9 – 37Q motifPROSITE-ProRule annotationAdd BLAST29

Sequence similaritiesi

Belongs to the DEAD box helicase family. RhlB subfamily.UniRule annotationSAAS annotation

Family and domain databases

CDDicd00079 HELICc, 1 hit
HAMAPiMF_00661 DEAD_helicase_RhlB, 1 hit
InterProiView protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR000629 RNA-helicase_DEAD-box_CS
IPR023554 RNA_helicase_ATP-dep_RhlB
IPR014014 RNA_helicase_DEAD_Q_motif
PfamiView protein in Pfam
PF00270 DEAD, 1 hit
PF00271 Helicase_C, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS00039 DEAD_ATP_HELICASE, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51195 Q_MOTIF, 1 hit

Sequencei

Sequence statusi: Complete.

A0A2N5DUP4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKTHLTEQK FSDFALHPLV VEALEKKGFH NCTPIQALAL PITVSGRDVA
60 70 80 90 100
GQAQTGTGKT LAFLASTFHY LLSHPADANR QTNQPRALIM APTRELAVQI
110 120 130 140 150
HADAEALSQV TGLKLGLAYG GDGYDKQLKV LESGVDILIG TTGRLIDYTK
160 170 180 190 200
QNHVNLGAIQ VVVLDEADRM FDLGFIKDIR WLFRRMPPAA QRLNMLFSAT
210 220 230 240 250
LSYRVKELAF EHMNNAESIE VEPEQKTGHR IKEELFYPSN EEKMRLLQTL
260 270 280 290 300
LEEEWPDRCI IFANTKHRCE DIWGHLAADG HRVGLLTGDV AQKKRLRILD
310 320 330 340 350
DFTKGNIDIL VATDVAARGL HIPAVTHVFN YDLPDDCEDY VHRIGRTGRA
360 370 380 390 400
GASGHSISLA CEEYALNLPA IEAYTGHSIP VSKYNSDALM TGLPAPKRLT
410 420 430
RPPRPGNGPR RNGSAPRRNS GAPRTNRKRP G
Length:431
Mass (Da):47,785
Last modified:April 25, 2018 - v1
Checksum:iD566247ADE5F64E9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
PJZH01000030 Genomic DNA Translation: PLR30529.1

Similar proteinsi

Entry informationi

Entry nameiA0A2N5DUP4_9GAMM
AccessioniPrimary (citable) accession number: A0A2N5DUP4
Entry historyiIntegrated into UniProtKB/TrEMBL: April 25, 2018
Last sequence update: April 25, 2018
Last modified: June 20, 2018
This is version 3 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

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