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Protein
Submitted name:

PDZ and LIM domain 1

Gene

PDLIM1

Organism
Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
PDZ and LIM domain 1Imported
Gene namesi
Name:PDLIM1Imported
OrganismiSaimiri boliviensis boliviensis (Bolivian squirrel monkey)Imported
Taxonomic identifieri39432 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniPlatyrrhiniCebidaeSaimiriinaeSaimiri
Proteomesi
  • UP000233220 Componenti: Whole Genome Shotgun Assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini198 – 257LIM zinc-bindingInterPro annotationAdd BLAST60

Keywords - Domaini

LIM domainPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

GeneTreeiENSGT00590000082980

Family and domain databases

InterProiView protein in InterPro
IPR031847 DUF4749
IPR028537 PDLIM1
IPR006643 Zasp-like_motif
IPR001781 Znf_LIM
PANTHERiPTHR24214:SF5 PTHR24214:SF5, 1 hit
PfamiView protein in Pfam
PF15936 DUF4749, 1 hit
PF00412 LIM, 1 hit
SMARTiView protein in SMART
SM00132 LIM, 1 hit
SM00735 ZM, 1 hit
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 1 hit
PS50023 LIM_DOMAIN_2, 1 hit

Sequencei

Sequence statusi: Complete.

A0A2K6S750-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTHLEAQNRI KGCVDNMTLT VARSEHKVWS PLVTEEGKRH PYKMNLASEP
60 70 80 90 100
QEVLHIGSAH NRSAMPFTAS PASGTTARVI TNQYNNPAGL YSSENISNFN
110 120 130 140 150
NALESKTAAS GVEVNSRPLD HAQPPSGLVI DKESEVYKML QEKQELNEPP
160 170 180 190 200
KQSTSFLVLQ EILESEEKGD PNKPSGFRSV KAPVTKVAAS IGNAQKLPMC
210 220 230 240 250
DKCGTGIVGV FVKLRERHRH PECYVCTDCG TNLKQKGHFF VEDQIYCEKH
260
ARERVTPPEG YDVVTVFPK
Length:269
Mass (Da):29,803
Last modified:March 28, 2018 - v1
Checksum:iE5D49101F16973C5
GO

Sequence databases

RefSeqiXP_010331565.1, XM_010333263.1

Genome annotation databases

EnsembliENSSBOT00000017474; ENSSBOP00000003212; ENSSBOG00000015982
GeneIDi101039646
KEGGisbq:101039646

Similar proteinsi

Cross-referencesi

Sequence databases

RefSeqiXP_010331565.1, XM_010333263.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSSBOT00000017474; ENSSBOP00000003212; ENSSBOG00000015982
GeneIDi101039646
KEGGisbq:101039646

Organism-specific databases

CTDi9124

Phylogenomic databases

GeneTreeiENSGT00590000082980

Family and domain databases

InterProiView protein in InterPro
IPR031847 DUF4749
IPR028537 PDLIM1
IPR006643 Zasp-like_motif
IPR001781 Znf_LIM
PANTHERiPTHR24214:SF5 PTHR24214:SF5, 1 hit
PfamiView protein in Pfam
PF15936 DUF4749, 1 hit
PF00412 LIM, 1 hit
SMARTiView protein in SMART
SM00132 LIM, 1 hit
SM00735 ZM, 1 hit
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 1 hit
PS50023 LIM_DOMAIN_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A2K6S750_SAIBB
AccessioniPrimary (citable) accession number: A0A2K6S750
Entry historyiIntegrated into UniProtKB/TrEMBL: March 28, 2018
Last sequence update: March 28, 2018
Last modified: September 12, 2018
This is version 6 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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