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Protein
Submitted name:

Uncharacterized protein

Gene

PDLIM1

Organism
Rhinopithecus roxellana (Golden snub-nosed monkey) (Pygathrix roxellana)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:PDLIM1Imported
OrganismiRhinopithecus roxellana (Golden snub-nosed monkey) (Pygathrix roxellana)Imported
Taxonomic identifieri61622 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniCercopithecidaeColobinaeRhinopithecus
Proteomesi
  • UP000233200 Componenti: Whole Genome Shotgun Assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini12 – 85PDZInterPro annotationAdd BLAST74
Domaini259 – 318LIM zinc-bindingInterPro annotationAdd BLAST60

Keywords - Domaini

LIM domainPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

GeneTreeiENSGT00590000082980

Family and domain databases

InterProiView protein in InterPro
IPR031847 DUF4749
IPR028537 PDLIM1
IPR001478 PDZ
IPR036034 PDZ_sf
IPR006643 Zasp-like_motif
IPR001781 Znf_LIM
PANTHERiPTHR24214:SF5 PTHR24214:SF5, 1 hit
PfamiView protein in Pfam
PF15936 DUF4749, 1 hit
PF00412 LIM, 1 hit
PF00595 PDZ, 1 hit
SMARTiView protein in SMART
SM00132 LIM, 1 hit
SM00228 PDZ, 1 hit
SM00735 ZM, 1 hit
SUPFAMiSSF50156 SSF50156, 1 hit
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 1 hit
PS50023 LIM_DOMAIN_2, 1 hit
PS50106 PDZ, 1 hit

Sequencei

Sequence statusi: Complete.

A0A2K6PWC1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTTQQIVLQG PGPWGFRLVG GKDFEQPLAI SRVTPGSKAA LADLCIGDVI
60 70 80 90 100
TAIDGENTSN MTHLEAQNRI KGCTDNMTLT VARSEHKVWS PLVTEEGGKR
110 120 130 140 150
HPYKMNLASE PQEVLHIGSA HNRSAMPFTA SPASSTTARV ITNQYNNPAG
160 170 180 190 200
LYSSENISNF NSALESKTAA SGVEANSRPL DHAQPPSSLV IDKESEVYKM
210 220 230 240 250
LQEKQELNEP PKQSTSFLVL QEILESEEKG DPNKPSGFRS VKAPVTKVAA
260 270 280 290 300
SIGNAQKLPM CDKCGTGIVG VFVKLRDRHR HPECYVCTDC GTNLKQKGHF
310 320 330
FVEDQIYCEK HARERVTPPE GYEVVTVFPK
Length:330
Mass (Da):36,105
Last modified:March 28, 2018 - v1
Checksum:i39C663F7447F5035
GO

Sequence databases

RefSeqiXP_010364546.1, XM_010366244.1

Genome annotation databases

EnsembliENSRROT00000045008; ENSRROP00000020824; ENSRROG00000034345
GeneIDi104664672
KEGGirro:104664672

Similar proteinsi

Cross-referencesi

Sequence databases

RefSeqiXP_010364546.1, XM_010366244.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRROT00000045008; ENSRROP00000020824; ENSRROG00000034345
GeneIDi104664672
KEGGirro:104664672

Organism-specific databases

CTDi9124

Phylogenomic databases

GeneTreeiENSGT00590000082980

Family and domain databases

InterProiView protein in InterPro
IPR031847 DUF4749
IPR028537 PDLIM1
IPR001478 PDZ
IPR036034 PDZ_sf
IPR006643 Zasp-like_motif
IPR001781 Znf_LIM
PANTHERiPTHR24214:SF5 PTHR24214:SF5, 1 hit
PfamiView protein in Pfam
PF15936 DUF4749, 1 hit
PF00412 LIM, 1 hit
PF00595 PDZ, 1 hit
SMARTiView protein in SMART
SM00132 LIM, 1 hit
SM00228 PDZ, 1 hit
SM00735 ZM, 1 hit
SUPFAMiSSF50156 SSF50156, 1 hit
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 1 hit
PS50023 LIM_DOMAIN_2, 1 hit
PS50106 PDZ, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A2K6PWC1_RHIRO
AccessioniPrimary (citable) accession number: A0A2K6PWC1
Entry historyiIntegrated into UniProtKB/TrEMBL: March 28, 2018
Last sequence update: March 28, 2018
Last modified: October 10, 2018
This is version 7 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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