Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial

Gene

POPTR_007G026400v3

Organism
Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).UniRule annotation

Catalytic activityi

Succinate + a quinone = fumarate + a quinol.UniRule annotation

Cofactori

FADUniRule annotation

Pathwayi: tricarboxylic acid cycle

This protein is involved in step 1 of the subpathway that synthesizes fumarate from succinate (eukaryal route).UniRule annotation
Proteins known to be involved in this subpathway in this organism are:
  1. Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (POPTR_007G026400v3), Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (POPTR_007G026400v3), Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (POPTR_007G026400v3), Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (POPTR_005G123900v3), Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (POPTR_007G026400v3), Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (POPTR_005G123900v3), Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (POPTR_001G338400v3), Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial (POPTR_007G026400v3)
This subpathway is part of the pathway tricarboxylic acid cycle, which is itself part of Carbohydrate metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes fumarate from succinate (eukaryal route), the pathway tricarboxylic acid cycle and in Carbohydrate metabolism.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionOxidoreductaseUniRule annotation
Biological processElectron transportUniRule annotation, Transport, Tricarboxylic acid cycleUniRule annotation
LigandFADUniRule annotation, Flavoprotein

Enzyme and pathway databases

UniPathwayi
UPA00223;UER01006

Names & Taxonomyi

Protein namesi
Recommended name:
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrialUniRule annotation (EC:1.3.5.1UniRule annotation)
Gene namesi
ORF Names:POPTR_007G026400v3Imported
OrganismiPopulus trichocarpa (Western balsam poplar) (Populus balsamifera subsp. trichocarpa)Imported
Taxonomic identifieri3694 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsMalpighialesSalicaceaeSaliceaePopulus
Proteomesi
  • UP000006729 Componenti: Chromosome 7

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

MembraneUniRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 346FAD_binding_2InterPro annotationAdd BLAST344
Domaini401 – 533Succ_DH_flav_CInterPro annotationAdd BLAST133

Sequence similaritiesi

Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.UniRule annotation

Keywords - Domaini

Transit peptideUniRule annotation

Family and domain databases

Gene3Di3.50.50.60, 2 hits
3.90.700.10, 1 hit
InterProiView protein in InterPro
IPR003953 FAD-binding_2
IPR036188 FAD/NAD-bd_sf
IPR037099 Fum_R/Succ_DH_flav-like_C_sf
IPR015939 Fum_Rdtase/Succ_DH_flav-like_C
IPR027477 Succ_DH/fumarate_Rdtase_cat_sf
IPR011281 Succ_DH_flav_su_fwd
IPR014006 Succ_Dhase_FrdA_Gneg
PfamiView protein in Pfam
PF00890 FAD_binding_2, 1 hit
PF02910 Succ_DH_flav_C, 1 hit
SUPFAMiSSF46977 SSF46977, 1 hit
SSF51905 SSF51905, 2 hits
SSF56425 SSF56425, 1 hit
TIGRFAMsiTIGR01816 sdhA_forward, 1 hit
TIGR01812 sdhA_frdA_Gneg, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 4 potential isoforms that are computationally mapped.iShow all

A0A2K1ZNA1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTEDDWRWHM YDTVKGSDWL GDQDAIQYMC REAPKAVIEL ENYGLPFSRT
60 70 80 90 100
EDGKIYQRAF GGQSLDFGKG GQAYRCACAA DRTGHALLHT LYGQAMKHNT
110 120 130 140 150
QFFVEYFALD LIMNNDGSCQ GVIALNMEDG TLHRFRAAST ILATGGYGRT
160 170 180 190 200
YFSATSAHTC TGDGNAMVAR AGIPLEDLEF VQFHPTGIYG AGCLITEGSR
210 220 230 240 250
GEGGILRNSE GERFMERYAP TAKDLASRDV VSRSMTMEIR EGRGVGPLKD
260 270 280 290 300
HIYLHLNHLP PDVLKERLPG ISETAAIFAG VDVTKEPIPV LPTVHYNMGG
310 320 330 340 350
IPTNYHGEVV TIKGDDPDAV IPGLMAAGEA ACASVHGANR LGANSLLDIV
360 370 380 390 400
VFGRACANRV AEIHRPGEKQ KPLEKDAGER TIARLDKLRN SNGSIPTSQI
410 420 430 440 450
RLNMQRIMQS NAAVFRTQET LEEGCHLIDK AWESFHDVKV KDRSLIWNSD
460 470 480 490 500
LIETVELENL LINACITMHS AEARKESRGA HAREDFTKRD DEKWMKHTLG
510 520 530
YWEKEKVRLD YRPVHMNTLD DEVETFPPKA RVY
Length:533
Mass (Da):59,335
Last modified:March 28, 2018 - v1
Checksum:i39198186D9886CEA
GO

Computationally mapped potential isoform sequencesi

There are 4 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
B9HEW3B9HEW3_POPTR
Succinate dehydrogenase [ubiquinone...
POPTR_007G026400v3
633Annotation score:
A0A2K1ZN98A0A2K1ZN98_POPTR
Succinate dehydrogenase [ubiquinone...
POPTR_007G026400v3
633Annotation score:
A0A2K1ZNA2A0A2K1ZNA2_POPTR
Succinate dehydrogenase [ubiquinone...
POPTR_007G026400v3
588Annotation score:
A0A2K1ZNA5A0A2K1ZNA5_POPTR
Succinate dehydrogenase [ubiquinone...
POPTR_007G026400v3
633Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM009296 Genomic DNA Translation: PNT26753.1

Entry informationi

Entry nameiA0A2K1ZNA1_POPTR
AccessioniPrimary (citable) accession number: A0A2K1ZNA1
Entry historyiIntegrated into UniProtKB/TrEMBL: March 28, 2018
Last sequence update: March 28, 2018
Last modified: June 20, 2018
This is version 4 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again