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Protein

Histone H2B

Gene

CR201_G0046179

Organism
Pongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

GO - Molecular functioni

Keywordsi

Molecular functionDNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Histone H2BUniRule annotation
Gene namesi
ORF Names:CR201_G0046179Imported, CR201_G0046185Imported, CR201_G0046191Imported, CR201_G0046194Imported, CR201_G0046206Imported
OrganismiPongo abelii (Sumatran orangutan) (Pongo pygmaeus abelii)Imported
Taxonomic identifieri9601 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaePongo

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chromosome, Nucleosome coreUniRule annotationSAAS annotation, NucleusUniRule annotationSAAS annotation

Interactioni

Subunit structurei

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.UniRule annotation

GO - Molecular functioni

Structurei

3D structure databases

SMRiA0A2J8S4Y0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini10 – 101HistoneInterPro annotationAdd BLAST92

Sequence similaritiesi

Belongs to the histone H2B family.UniRule annotationSAAS annotation

Phylogenomic databases

KOiK11252

Family and domain databases

Gene3Di1.10.20.10, 1 hit
InterProiView protein in InterPro
IPR009072 Histone-fold
IPR007125 Histone_H2A/H2B/H3
IPR000558 Histone_H2B
PANTHERiPTHR23428 PTHR23428, 1 hit
PfamiView protein in Pfam
PF00125 Histone, 1 hit
PRINTSiPR00621 HISTONEH2B
SMARTiView protein in SMART
SM00427 H2B, 1 hit
SUPFAMiSSF47113 SSF47113, 1 hit
PROSITEiView protein in PROSITE
PS00357 HISTONE_H2B, 1 hit

Sequencei

Sequence statusi: Complete.

A0A2J8S4Y0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPEPAKSAPA PKKGSKKAVT KAQKKDGKKR KRSRKESYSV YVYKVLKQVH
60 70 80 90 100
PDTGISSKAM GIMNSFVNDI FERIAGEASR LAHYNKRSTI TSREIQTAVR
110 120
LLLPGELAKH AVSEGTKAVT KYTSSK
Length:126
Mass (Da):13,906
Last modified:March 28, 2018 - v1
Checksum:iFAE1479F44BE703D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
NDHI03003609 Genomic DNA Translation: PNJ15810.1
NDHI03003609 Genomic DNA Translation: PNJ15811.1
NDHI03003609 Genomic DNA Translation: PNJ15818.1
NDHI03003609 Genomic DNA Translation: PNJ15819.1
NDHI03003609 Genomic DNA Translation: PNJ15822.1
NDHI03003609 Genomic DNA Translation: PNJ15824.1
NDHI03003609 Genomic DNA Translation: PNJ15834.1
RefSeqiNP_001126171.1, NM_001132699.1
XP_002816569.1, XM_002816523.2
XP_009239769.1, XM_009241494.1
XP_009239778.1, XM_009241503.1
UniGeneiPab.17803

Genome annotation databases

GeneIDi100173133
100439336
100441051
100442161
KEGGipon:100173133
pon:100439336
pon:100441051
pon:100442161

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
NDHI03003609 Genomic DNA Translation: PNJ15810.1
NDHI03003609 Genomic DNA Translation: PNJ15811.1
NDHI03003609 Genomic DNA Translation: PNJ15818.1
NDHI03003609 Genomic DNA Translation: PNJ15819.1
NDHI03003609 Genomic DNA Translation: PNJ15822.1
NDHI03003609 Genomic DNA Translation: PNJ15824.1
NDHI03003609 Genomic DNA Translation: PNJ15834.1
RefSeqiNP_001126171.1, NM_001132699.1
XP_002816569.1, XM_002816523.2
XP_009239769.1, XM_009241494.1
XP_009239778.1, XM_009241503.1
UniGeneiPab.17803

3D structure databases

SMRiA0A2J8S4Y0
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi100173133
100439336
100441051
100442161
KEGGipon:100173133
pon:100439336
pon:100441051
pon:100442161

Organism-specific databases

CTDi8347

Phylogenomic databases

KOiK11252

Family and domain databases

Gene3Di1.10.20.10, 1 hit
InterProiView protein in InterPro
IPR009072 Histone-fold
IPR007125 Histone_H2A/H2B/H3
IPR000558 Histone_H2B
PANTHERiPTHR23428 PTHR23428, 1 hit
PfamiView protein in Pfam
PF00125 Histone, 1 hit
PRINTSiPR00621 HISTONEH2B
SMARTiView protein in SMART
SM00427 H2B, 1 hit
SUPFAMiSSF47113 SSF47113, 1 hit
PROSITEiView protein in PROSITE
PS00357 HISTONE_H2B, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A2J8S4Y0_PONAB
AccessioniPrimary (citable) accession number: A0A2J8S4Y0
Entry historyiIntegrated into UniProtKB/TrEMBL: March 28, 2018
Last sequence update: March 28, 2018
Last modified: October 10, 2018
This is version 7 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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