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Protein
Submitted name:

SOX5 isoform 10

Gene

SOX5

Organism
Pan troglodytes (Chimpanzee)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi435 – 503HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
SOX5 isoform 10Imported
Submitted name:
SOX5 isoform 6Imported
Submitted name:
SRY-box 5Imported
Gene namesi
Name:SOX5Imported
ORF Names:CK820_G0019061Imported
OrganismiPan troglodytes (Chimpanzee)Imported
Taxonomic identifieri9598 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaePan
Proteomesi
  • UP000002277 Componenti: Chromosome 12

Organism-specific databases

VGNCiVGNC:13451 SOX5

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Structurei

3D structure databases

SMRiA0A2J8QR74
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini435 – 503HMG boxInterPro annotationAdd BLAST69

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili182 – 202Sequence analysisAdd BLAST21
Coiled coili204 – 255Sequence analysisAdd BLAST52
Coiled coili373 – 393Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

GeneTreeiENSGT00760000119274

Family and domain databases

Gene3Di1.10.30.10, 1 hit
InterProiView protein in InterPro
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
PfamiView protein in Pfam
PF00505 HMG_box, 1 hit
SMARTiView protein in SMART
SM00398 HMG, 1 hit
SUPFAMiSSF47095 SSF47095, 1 hit
PROSITEiView protein in PROSITE
PS50118 HMG_BOX_2, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 9 potential isoforms that are computationally mapped.Show allAlign All

A0A2J8QR74-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSSKRPASPY GEADGEVAMV TSRQKVEEEE SDGLPAFHLP LHVSFPNKPH
60 70 80 90 100
SEEFQPVSLL TQETCGHRTP TSQHNTMEVD GNKVMSSFAP HNSSTSPQKA
110 120 130 140 150
EEGGRQSGES LSSTALGTPE RRKGSLADVV DTLKQRKMEE LIKNEPEETP
160 170 180 190 200
SIEKLLSKDW KDKLLAMGSG NFGEIKGTPE SLAEKERQLM GMINQLTSLR
210 220 230 240 250
EQLLAAHDEQ KKLAASQIEK QRQQMELAKQ QQEQIARQQQ QLLQQQHKIN
260 270 280 290 300
LLQQQIQVQG QLPPLMIPVF PPDQRTLAAA AQQGFLLPPG FSYKAGCSDP
310 320 330 340 350
YPVQLIPTTM AAAAAATPGL GPLQLQQLYA AQLAAMQVSP GGKLPGIPQG
360 370 380 390 400
NLGAAVSPTS IHTDKSTNSP PPKSKEKTTL ESLTQQLAVK QNEEGKFSHA
410 420 430 440 450
MMDFNLSGDS DGSAGVSESR IYRESRGRGS NEPHIKRPMN AFMVWAKDER
460 470 480 490 500
RKILQAFPDM HNSNISKILG SRWKAMTNLE KQPYYEEQAR LSKQHLEKYP
510 520 530 540 550
DYKYKPRPKR TCLVDGKKLR IGEYKAIMRN RRQEMRQYFN VGQQAQIPIA
560 570 580 590 600
TAGVVYPGAI AMAGMPSPHL PSEHSSVSSS PEPGMPVIQS TYGVKGEEPH
610 620 630 640
IKEEIQAEDI NGEIYDEYDE EEDDPDVDYG SDSENHIAGQ AN
Length:642
Mass (Da):71,044
Last modified:April 25, 2018 - v1
Checksum:i1F142CAF87059BAA
GO

Computationally mapped potential isoform sequencesi

There are 9 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
H2Q5L7H2Q5L7_PANTR
SRY-box 5
SOX5
765Annotation score:
K7DP88K7DP88_PANTR
SOX5 isoform 5
SOX5 CK820_G0019061
763Annotation score:
A0A2I3S3M8A0A2I3S3M8_PANTR
SOX5 isoform 1
SOX5 CK820_G0019061
753Annotation score:
A0A2I3SYG4A0A2I3SYG4_PANTR
SOX5 isoform 16
SOX5 CK820_G0019061
377Annotation score:
A0A2I3T5K6A0A2I3T5K6_PANTR
SRY-box 5
SOX5
383Annotation score:
A0A2I3TTU3A0A2I3TTU3_PANTR
SRY-box 5
SOX5
464Annotation score:
A0A2I3TNI4A0A2I3TNI4_PANTR
SRY-box 5
SOX5
717Annotation score:
A0A2I3S6G9A0A2I3S6G9_PANTR
SRY-box 5
SOX5
509Annotation score:
A0A2I3TAB5A0A2I3TAB5_PANTR
SOX5 isoform 2
SOX5 CK820_G0019061
128Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACZ04032280 Genomic DNA No translation available.
AACZ04032281 Genomic DNA No translation available.
AACZ04032282 Genomic DNA No translation available.
NBAG03000023 Genomic DNA Translation: PNI98772.1
NBAG03000023 Genomic DNA Translation: PNI98775.1

Genome annotation databases

EnsembliENSPTRT00000097876; ENSPTRP00000093298; ENSPTRG00000004770

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACZ04032280 Genomic DNA No translation available.
AACZ04032281 Genomic DNA No translation available.
AACZ04032282 Genomic DNA No translation available.
NBAG03000023 Genomic DNA Translation: PNI98772.1
NBAG03000023 Genomic DNA Translation: PNI98775.1

3D structure databases

SMRiA0A2J8QR74
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSPTRT00000097876; ENSPTRP00000093298; ENSPTRG00000004770

Organism-specific databases

VGNCiVGNC:13451 SOX5

Phylogenomic databases

GeneTreeiENSGT00760000119274

Family and domain databases

Gene3Di1.10.30.10, 1 hit
InterProiView protein in InterPro
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
PfamiView protein in Pfam
PF00505 HMG_box, 1 hit
SMARTiView protein in SMART
SM00398 HMG, 1 hit
SUPFAMiSSF47095 SSF47095, 1 hit
PROSITEiView protein in PROSITE
PS50118 HMG_BOX_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A2J8QR74_PANTR
AccessioniPrimary (citable) accession number: A0A2J8QR74
Secondary accession number(s): A0A2I3TVU7
Entry historyiIntegrated into UniProtKB/TrEMBL: April 25, 2018
Last sequence update: April 25, 2018
Last modified: July 18, 2018
This is version 3 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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