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Protein
Submitted name:

SF3B2 isoform 2

Gene

SF3B2

Organism
Pan troglodytes (Chimpanzee)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
SF3B2 isoform 2Imported
Submitted name:
Splicing factor 3b subunit 2Imported
Submitted name:
Splicing factor 3b, subunit 2, 145kDaImported
Gene namesi
Name:SF3B2Imported
ORF Names:CK820_G0033901Imported
OrganismiPan troglodytes (Chimpanzee)Imported
Taxonomic identifieri9598 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaePan
Proteomesi
  • UP000002277 Componenti: Chromosome 11

Organism-specific databases

VGNCiVGNC:3052 SF3B2

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

Protein-protein interaction databases

STRINGi9598.ENSPTRP00000006745

Structurei

3D structure databases

SMRiA0A2I3TKX5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini24 – 58SAPInterPro annotationAdd BLAST35

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili140 – 167Sequence analysisAdd BLAST28
Coiled coili178 – 198Sequence analysisAdd BLAST21
Coiled coili273 – 299Sequence analysisAdd BLAST27
Coiled coili533 – 556Sequence analysisAdd BLAST24

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG2330 Eukaryota
COG5182 LUCA
GeneTreeiENSGT00390000006734
OrthoDBiEOG091G0A5N
TreeFamiTF300635

Family and domain databases

InterProiView protein in InterPro
IPR007180 DUF382
IPR006568 PSP_pro-rich
IPR003034 SAP_dom
PfamiView protein in Pfam
PF04037 DUF382, 1 hit
PF04046 PSP, 1 hit
PF02037 SAP, 1 hit
SMARTiView protein in SMART
SM00581 PSP, 1 hit
SM00513 SAP, 1 hit
PROSITEiView protein in PROSITE
PS50800 SAP, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All

A0A2I3TKX5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MATEHPEPPK AELQLPPPPP PGHYGAWAAQ ELQAKLAEIG APIQGNREEL
60 70 80 90 100
VERLQSYTRQ TGIVLNRPVL RGEDGDKAAP PPMSAQLPGI PMPPPPLGLP
110 120 130 140 150
PLQPPPPPPP PPPGLGLGFP MAHPPNLGPP PPLRVGEPVA LSEEERLKLA
160 170 180 190 200
QQQAALLMQQ EERAKQQGDH SLKEHELLEQ QKRAAVLLEQ ERQQEIAKMG
210 220 230 240 250
TPVPRPPQDM GQIGVRTPLG PRVAAPVGPV GPTPTVLPMG APVPRPRGPP
260 270 280 290 300
PPPGDENREM DDPSVGPKIP QALEKILQLK ESRQEEMNSQ QEEEEMETDA
310 320 330 340 350
RSSLGQSASE TEEDTVSVSK KEKNRKRRNR KKKKKPQRVR GVSSESSGDR
360 370 380 390 400
EKDSTRSRGS DSPAADVEIE YVTEEPEIYE PNFIFFKRIF EAFKLTDDVK
410 420 430 440 450
KEKEKEPEKL DKLENSAAPK KKGFEEEHKD SDDDSSDDEQ EKKPEAPKLS
460 470 480 490 500
KKKLRRMNRF TVAELKQLVA RPDVVEMHDV TAQDPKLLVH LKATRNSVPV
510 520 530 540 550
PRHWCFKRKY LQGKRGIEKP PFELPDFIKR TGIQEMREAL QEKEEQKTMK
560 570 580 590 600
SKMREKVRPK MGKIDIDYQK LHDAFFKWQT KPKLTIHGDL YYEGKEFETR
610 620 630 640 650
LKEKKPGDLS DELRISLGMP VGPNAHKVPP PWLIAMQRYG PPPSYPNLKI
660 670 680 690 700
PGLNSPIPES CSFGYHAGGW GKPPVDETGK PLYGDVFGTN AAEFQTKTEE
710 720 730 740 750
EEIDRTPWGE LEPSDEESSE EEEEEESDED KPDETGFITP ADSGLITPGG
760 770 780 790 800
FSSVPAGMET PELIELRKKK IEEAMDGSET PQLFTVLPEK RTATVGGAMM
810 820 830 840 850
GSTHIYDMST VMSRKGPAPE LQGVEVALAP EELELDPMAM TQKYEEHVRE
860 870 880 890
QQAQVEKEDF SDMVAEHAAK QKQKKRKAQP QDSRGGSKKY KEFKF
Length:895
Mass (Da):100,228
Last modified:February 28, 2018 - v1
Checksum:iD372AFA679443AD6
GO

Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
H2Q457H2Q457_PANTR
Splicing factor 3b subunit 2
SF3B2
891Annotation score:
A0A2I3RX16A0A2I3RX16_PANTR
Splicing factor 3b subunit 2
SF3B2
898Annotation score:
A0A2I3TWY2A0A2I3TWY2_PANTR
Splicing factor 3b subunit 2
SF3B2
882Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACZ04016223 Genomic DNA No translation available.
GABF01000776 mRNA Translation: JAA21369.1
GABD01001898 mRNA Translation: JAA31202.1
NBAG03000050 Genomic DNA Translation: PNI93645.1
RefSeqiXP_508570.2, XM_508570.6

Genome annotation databases

EnsembliENSPTRT00000082091; ENSPTRP00000089573; ENSPTRG00000003912
GeneIDi451343

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACZ04016223 Genomic DNA No translation available.
GABF01000776 mRNA Translation: JAA21369.1
GABD01001898 mRNA Translation: JAA31202.1
NBAG03000050 Genomic DNA Translation: PNI93645.1
RefSeqiXP_508570.2, XM_508570.6

3D structure databases

SMRiA0A2I3TKX5
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9598.ENSPTRP00000006745

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSPTRT00000082091; ENSPTRP00000089573; ENSPTRG00000003912
GeneIDi451343

Organism-specific databases

CTDi10992
VGNCiVGNC:3052 SF3B2

Phylogenomic databases

eggNOGiKOG2330 Eukaryota
COG5182 LUCA
GeneTreeiENSGT00390000006734
OrthoDBiEOG091G0A5N
TreeFamiTF300635

Family and domain databases

InterProiView protein in InterPro
IPR007180 DUF382
IPR006568 PSP_pro-rich
IPR003034 SAP_dom
PfamiView protein in Pfam
PF04037 DUF382, 1 hit
PF04046 PSP, 1 hit
PF02037 SAP, 1 hit
SMARTiView protein in SMART
SM00581 PSP, 1 hit
SM00513 SAP, 1 hit
PROSITEiView protein in PROSITE
PS50800 SAP, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A2I3TKX5_PANTR
AccessioniPrimary (citable) accession number: A0A2I3TKX5
Secondary accession number(s): A0A2J8QBK2
Entry historyiIntegrated into UniProtKB/TrEMBL: February 28, 2018
Last sequence update: February 28, 2018
Last modified: September 12, 2018
This is version 6 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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