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Protein
Submitted name:

SOX5 isoform 1

Gene

SOX5

Organism
Pan troglodytes (Chimpanzee)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi546 – 614HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
SOX5 isoform 1Imported
Submitted name:
SRY-box 5Imported
Gene namesi
Name:SOX5Imported
ORF Names:CK820_G0019061Imported
OrganismiPan troglodytes (Chimpanzee)Imported
Taxonomic identifieri9598 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaePan
Proteomesi
  • UP000002277 Componenti: Chromosome 12

Organism-specific databases

VGNCiVGNC:13451 SOX5

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Structurei

3D structure databases

SMRiA0A2I3S3M8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini546 – 614HMG boxInterPro annotationAdd BLAST69

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili185 – 205Sequence analysisAdd BLAST21
Coiled coili207 – 258Sequence analysisAdd BLAST52
Coiled coili443 – 470Sequence analysisAdd BLAST28
Coiled coili484 – 504Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

GeneTreeiENSGT00760000119274
OMAiMRQYFSV

Family and domain databases

Gene3Di1.10.30.10, 1 hit
InterProiView protein in InterPro
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
PfamiView protein in Pfam
PF00505 HMG_box, 1 hit
SMARTiView protein in SMART
SM00398 HMG, 1 hit
SUPFAMiSSF47095 SSF47095, 1 hit
PROSITEiView protein in PROSITE
PS50118 HMG_BOX_2, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 9 potential isoforms that are computationally mapped.Show allAlign All

A0A2I3S3M8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSVMSSKRPA SPYGEADGEV AMVTSRQKVE EEESDGLPAF HLPLHVSFPN
60 70 80 90 100
KPHSEEFQPV SLLTQETCGH RTPTSQHNTM EVDGNKVMSS FAPHNSSTSP
110 120 130 140 150
QKAEEGGRQS GESLSSTALG TPERRKGSLA DVVDTLKQRK MEELIKNEPE
160 170 180 190 200
ETPSIEKLLS KDWKDKLLAM GSGNFGEIKG TPESLAEKER QLMGMINQLT
210 220 230 240 250
SLREQLLAAH DEQKKLAASQ IEKQRQQMEL AKQQQEQIAR QQQQLLQQQH
260 270 280 290 300
KINLLQQQIQ VQGQLPPLMI PVFPPDQRTL AAAAQQGFLL PPGFSYKAGC
310 320 330 340 350
SDPYPVQLIP TTMAAAAAAT PGLGPLQLQQ LYAAQLAAMQ VSPGGKLPGI
360 370 380 390 400
PQGNLGAAVS PTSIHTDKST NSPPPKSKDE VAQPLNLSAK PKTSDGKSPT
410 420 430 440 450
SPTSPHMPAL RINSGAGPLK ASVPAALASP SARVSTIGYL NDHDAVTKAI
460 470 480 490 500
QEARQMKEQL RREQQVLDGK VAVVNSLGLN NCRTEKEKTT LESLTQQLAV
510 520 530 540 550
KQNEEGKFSH AMMDFNLSGD SDGSAGVSES RIYRESRGRG SNEPHIKRPM
560 570 580 590 600
NAFMVWAKDE RRKILQAFPD MHNSNISKIL GSRWKAMTNL EKQPYYEEQA
610 620 630 640 650
RLSKQHLEKY PDYKYKPRPK RTCLVDGKKL RIGEYKAIMR NRRQEMRQYF
660 670 680 690 700
NVGQQAQIPI ATAGVVYPGA IAMAGMPSPH LPSEHSSVSS SPEPGMPVIQ
710 720 730 740 750
STYGVKGEEP HIKEEIQAED INGEIYDEYD EEEDDPDVDY GSDSENHIAG

QAN
Length:753
Mass (Da):82,770
Last modified:February 28, 2018 - v1
Checksum:i57F018BA2D8B901E
GO

Computationally mapped potential isoform sequencesi

There are 9 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
H2Q5L7H2Q5L7_PANTR
SRY-box 5
SOX5
765Annotation score:
K7DP88K7DP88_PANTR
SOX5 isoform 5
SOX5 CK820_G0019061
763Annotation score:
A0A2I3SYG4A0A2I3SYG4_PANTR
SOX5 isoform 16
SOX5 CK820_G0019061
377Annotation score:
A0A2J8QR74A0A2J8QR74_PANTR
SOX5 isoform 10
SOX5 CK820_G0019061
642Annotation score:
A0A2I3TNI4A0A2I3TNI4_PANTR
SRY-box 5
SOX5
717Annotation score:
A0A2I3TTU3A0A2I3TTU3_PANTR
SRY-box 5
SOX5
464Annotation score:
A0A2I3T5K6A0A2I3T5K6_PANTR
SRY-box 5
SOX5
383Annotation score:
A0A2I3S6G9A0A2I3S6G9_PANTR
SRY-box 5
SOX5
509Annotation score:
A0A2I3TAB5A0A2I3TAB5_PANTR
SOX5 isoform 2
SOX5 CK820_G0019061
128Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACZ04032280 Genomic DNA No translation available.
AACZ04032281 Genomic DNA No translation available.
AACZ04032282 Genomic DNA No translation available.
NBAG03000023 Genomic DNA Translation: PNI98767.1
RefSeqiXP_016780385.1, XM_016924896.1

Genome annotation databases

EnsembliENSPTRT00000110224; ENSPTRP00000071612; ENSPTRG00000004770
GeneIDi740110

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACZ04032280 Genomic DNA No translation available.
AACZ04032281 Genomic DNA No translation available.
AACZ04032282 Genomic DNA No translation available.
NBAG03000023 Genomic DNA Translation: PNI98767.1
RefSeqiXP_016780385.1, XM_016924896.1

3D structure databases

SMRiA0A2I3S3M8
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSPTRT00000110224; ENSPTRP00000071612; ENSPTRG00000004770
GeneIDi740110

Organism-specific databases

CTDi6660
VGNCiVGNC:13451 SOX5

Phylogenomic databases

GeneTreeiENSGT00760000119274
OMAiMRQYFSV

Family and domain databases

Gene3Di1.10.30.10, 1 hit
InterProiView protein in InterPro
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
PfamiView protein in Pfam
PF00505 HMG_box, 1 hit
SMARTiView protein in SMART
SM00398 HMG, 1 hit
SUPFAMiSSF47095 SSF47095, 1 hit
PROSITEiView protein in PROSITE
PS50118 HMG_BOX_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A2I3S3M8_PANTR
AccessioniPrimary (citable) accession number: A0A2I3S3M8
Secondary accession number(s): A0A2J8QR67
Entry historyiIntegrated into UniProtKB/TrEMBL: February 28, 2018
Last sequence update: February 28, 2018
Last modified: November 7, 2018
This is version 7 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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