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UniProtKB - A0A2I0TRG1 (A0A2I0TRG1_LIMLA)

Entry version 15 (19 Jan 2022)
Sequence version 1 (28 Feb 2018)
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Protein
Submitted name:

Uncharacterized protein

Gene

llap_13307

Organism
Limosa lapponica baueri
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Uncharacterized proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:llap_13307Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiLimosa lapponica baueriImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1758121 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Archelosauria › Archosauria › Dinosauria › Saurischia › Theropoda › Coelurosauria › Aves › Neognathae › Charadriiformes › Scolopacidae › Limosa ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000233556 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili9 – 29Sequence analysisAdd BLAST21
Coiled coili405 – 425Sequence analysisAdd BLAST21
Coiled coili510 – 530Sequence analysisAdd BLAST21
Coiled coili826 – 853Sequence analysisAdd BLAST28
Coiled coili870 – 893Sequence analysisAdd BLAST24
Coiled coili904 – 931Sequence analysisAdd BLAST28
Coiled coili962 – 989Sequence analysisAdd BLAST28
Coiled coili996 – 1023Sequence analysisAdd BLAST28
Coiled coili1179 – 1217Sequence analysisAdd BLAST39
Coiled coili1246 – 1266Sequence analysisAdd BLAST21
Coiled coili1289 – 1309Sequence analysisAdd BLAST21
Coiled coili1448 – 1468Sequence analysisAdd BLAST21
Coiled coili1526 – 1553Sequence analysisAdd BLAST28
Coiled coili1567 – 1587Sequence analysisAdd BLAST21
Coiled coili1664 – 1694Sequence analysisAdd BLAST31
Coiled coili1783 – 1810Sequence analysisAdd BLAST28
Coiled coili1900 – 1920Sequence analysisAdd BLAST21
Coiled coili2303 – 2323Sequence analysisAdd BLAST21

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR018159, Spectrin/alpha-actinin
IPR002017, Spectrin_repeat

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00435, Spectrin, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00150, SPEC, 10 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A2I0TRG1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLRDLKVWAE QFERDIARAQ VAETSLQEKY QLVDWHRHLD KSLPAPLGTI 
        60         70         80         90        100
GAWLYRAEAA LREEVTVQQA HEETANTIHR KLEQHKDLLK NIDGHKKAFH 
       110        120        130        140        150
EIHGARSVNG VPVPPDQLED MAERFNFVVS SSELHLLKME FLELKYRLLS 
       160        170        180        190        200
LLVLAESKLK SWIIKYGRRE SVELLLQNYI SVIENSKFFE QYEVTYQILK 
       210        220        230        240        250
RAAEMYAKAN GSVEEVENVT KFMNETSAQW RNLSVEVRSV RSMLEEVIAN 
       260        270        280        290        300
WDRYSSTVAG LQAWLEDAEK MLNQPEHSKK DFFRHLPHWI QQHTAMNDAG 
       310        320        330        340        350
NFLIETCDET ISRDLKQQLL LLNGRWRELF MQVKQYARAD ELDKMKKEYL 
       360        370        380        390        400
DGVAHLTAFI DGSNRKFSVP VEVSFLDVKM FVQDLEVKEY SCALLYECQR 
       410        420        430        440        450
LLSPLEELEK QITHFYESLE KVNEIISILD PEAQPTSVLK QKAQDLVAYQ 
       460        470        480        490        500
ENCKKDLSLI ERNSQSILQC VASREVLQHF HQSTFQKKVT QVQLTFQNMV 
       510        520        530        540        550
RKAGDWRKNI EANSRLMKKF EESRAELENV IQIANCCLKE KGNPEELLRK 
       560        570        580        590        600
HSEFFNQLDQ RVLNAFLKAC DELTDILPEQ EQHNLQEAVR KLHRQWKDLQ 
       610        620        630        640        650
TEAPYHLIHL KIEIQKSRFL VTVEECKAEL ARQNKVLSRE GNERMIEEHK 
       660        670        680        690        700
LFFGDKGPYQ LCEKRLQRIE ELCQKLPVSD PVRATLESSQ RILKDLKSQI 
       710        720        730        740        750
NSTYVKLTEH SDTWKGYKNR FSELANWISS TETELKKIKE SVHDTAKYKQ 
       760        770        780        790        800
CKASVGEIRK RINKQGENHS WLKSRLAVLT TVCPDLEAKK TEDELCKLSS 
       810        820        830        840        850
DFKGLLDLLA EVEKTLGTVG DCVQYKEEVK SAIEELINNS KEAQAEAEKI 
       860        870        880        890        900
LDTESLLQAQ QLLLHHQQRT RRLRAKRQDV QQQISQAKQL QTKGGLPSTM 
       910        920        930        940        950
QEDLQKLEGT LENMQQTMEK REEQLQVTIN KWEQFEKDKE TVVKYLNQAS 
       960        970        980        990       1000
SALERILNFS SLESLSSELD QTKELSKQAE AMAVQAENLV KNSSEIQLGS 
      1010       1020       1030       1040       1050
KNKQSLQQQA KSIQEQVKKV EVTLEEDIKS MEMVKSKWEH FGNNFEALSI 
      1060       1070       1080       1090       1100
WIAEQEKELE TLETSSSPLD IQISQIKVIN KEIDGKITGI SKLEEEAESF 
      1110       1120       1130       1140       1150
SQFVTSGEYA HIKAKLTQVK RYWEELRDHA QRLEGTITGN ASAQQKHEEN 
      1160       1170       1180       1190       1200
LKQDLCHTVE KLSNTLASLS ACARKLANKE KAGQEVTSLQ QKYEKVLENA 
      1210       1220       1230       1240       1250
KEKQTLLETL LALWQKQEKE LSAFLTWLEE CEATAKPSEQ YVSADRVKLE 
      1260       1270       1280       1290       1300
AELQSLQDLR ADIESHASVY ESLLRLNESL FPTASKQCVK TIEEKFEELD 
      1310       1320       1330       1340       1350
ERINFLQSLV AEHGQFDELL LGFSDWIKQF LAELQATSEI NTADQQLAAS 
      1360       1370       1380       1390       1400
HNKNHSMEIE SRKKQLQSLK EHVDKLCSFS CPEDQQTLQG KTEDCFQIFQ 
      1410       1420       1430       1440       1450
EASQITSQRQ EALDQLRVFL ELHSAASGVL HQLRQTVEKT GNMDKTKSEL 
      1460       1470       1480       1490       1500
LEKKLNDVIQ DLNKLESVAI SLDGSLTKAQ YHLKHSISEQ RTSCRAVVDN 
      1510       1520       1530       1540       1550
LCLELEAVQN LLGTKQSEAE ALGALRRSFM ERKEQLLKRI EDTEEKADKE 
      1560       1570       1580       1590       1600
GMKEATLQAF QQRLRIFNQL DEELNSHQHE LQWLMDKAKQ IAQKDITLAP 
      1610       1620       1630       1640       1650
EIDKEINSLE SLWEDTKKVI HEKKEQSCIL IDLMKEYQSL KSTVMKVIDN 
      1660       1670       1680       1690       1700
ADSASVIKSI WKDHEDVRRA LSKHEAAKND LSDKQKDLDT YTNKGKHLLA 
      1710       1720       1730       1740       1750
ELKRVHNCDS TAVKEDLDCM VDKWLDVSER IEDNIDRLGV SVSLWDDILK 
      1760       1770       1780       1790       1800
TGDEMDGWCT KCISQLNEGI SNLSNSQRME VFLKDFQSEV KDKELKLEQL 
      1810       1820       1830       1840       1850
RSKISELKEL THSQEPPADL QFIESDLKQK LDHVKEMSET AKETLKDFSA 
      1860       1870       1880       1890       1900
QKMQLQKCIE QMTDWLTEAE ETLLSCARNL DPEALSKETQ KDLQLQQSSI 
      1910       1920       1930       1940       1950
DSIRENLNSL CRKYHSVELE TLGGTVTSLI KKYEAVNLLC SRTQTSMQES 
      1960       1970       1980       1990       2000
LEKHFLLIDS CMFKLYFVIQ SVLDSVSEGR NKLDAACKEG ESLYACLPKP 
      2010       2020       2030       2040       2050
VVSHIQEQIA KSNQNFQEFL NQCLNDKKAL EACASHLGSF EDQHKKLGLW 
      2060       2070       2080       2090       2100
IHDMEERIST EALGECKQLI PEKKKEVQKV EKFLEELLNS RESFDKLSQM 
      2110       2120       2130       2140       2150
AQALNEEGHG AGREVRLASQ HLTSYQNMVK TVKEKLRTCQ LALQEHLTLE 
      2160       2170       2180       2190       2200
EALQNMWSWV KEVQNKLASS ESTVGSKATL ERRLAQIQEI LLLKGDGEVK 
      2210       2220       2230       2240       2250
LNMAIGKGEQ ALRSSNEEGQ KVIQTELQTL KDVWNDIIST SVNWQSCLET 
      2260       2270       2280       2290       2300
VISQWNEYLE RKNQLEQWLE KLDHKVEQPL EPQIGLKEKF AQLDHFQAIV 
      2310       2320       2330       2340       2350
SEIEDHSGDL HQLIEKAAEL YEKTEDDSFG EAAQEELKTQ FNDITTVAKE 
      2360       2370       2380       2390       2400
KMRKVEDIVK DHLLYLDAVH EFTDWLHSAK EELHRWSDTS GDTATIQKKL 

AKINVR
Length:2,406
Mass (Da):277,504
Last modified:February 28, 2018 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iAA48B36DDD25AAFD
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
KZ507679 Genomic DNA Translation: PKU36390.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KZ507679 Genomic DNA Translation: PKU36390.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Family and domain databases

InterProiView protein in InterPro
IPR018159, Spectrin/alpha-actinin
IPR002017, Spectrin_repeat
PfamiView protein in Pfam
PF00435, Spectrin, 1 hit
SMARTiView protein in SMART
SM00150, SPEC, 10 hits

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A2I0TRG1_LIMLA
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A2I0TRG1
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 28, 2018
Last sequence update: February 28, 2018
Last modified: January 19, 2022
This is version 15 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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