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UniProtKB - A0A2I0TRD3 (A0A2I0TRD3_LIMLA)

Entry version 11 (12 Aug 2020)
Sequence version 1 (28 Feb 2018)
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Protein

WD_REPEATS_REGION domain-containing protein

Gene

llap_13325

Organism
Limosa lapponica baueri
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
WD_REPEATS_REGION domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:llap_13325Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiLimosa lapponica baueriImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1758121 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Archelosauria › Archosauria › Dinosauria › Saurischia › Theropoda › Coelurosauria › Aves › Neognathae › Charadriiformes › Scolopacidae › Limosa ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000233556 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1213 – 1337WD_REPEATS_REGIONInterPro annotationAdd BLAST125
<p>This subsection of the 'Family and Domains' section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati1253 – 1297WDPROSITE-ProRule annotationAdd BLAST45

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni77 – 128DisorderedSequence analysisAdd BLAST52
Regioni143 – 218DisorderedSequence analysisAdd BLAST76
Regioni305 – 367DisorderedSequence analysisAdd BLAST63
Regioni408 – 445DisorderedSequence analysisAdd BLAST38
Regioni499 – 659DisorderedSequence analysisAdd BLAST161
Regioni888 – 932DisorderedSequence analysisAdd BLAST45
Regioni962 – 1011DisorderedSequence analysisAdd BLAST50
Regioni1144 – 1212DisorderedSequence analysisAdd BLAST69

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi91 – 128PolyampholyteSequence analysisAdd BLAST38
Compositional biasi143 – 159PolarSequence analysisAdd BLAST17
Compositional biasi169 – 205PolarSequence analysisAdd BLAST37
Compositional biasi305 – 320PolarSequence analysisAdd BLAST16
Compositional biasi408 – 422PolyampholyteSequence analysisAdd BLAST15
Compositional biasi425 – 445PolarSequence analysisAdd BLAST21
Compositional biasi499 – 534PolarSequence analysisAdd BLAST36
Compositional biasi535 – 578PolyampholyteSequence analysisAdd BLAST44
Compositional biasi596 – 610PolyampholyteSequence analysisAdd BLAST15
Compositional biasi615 – 642PolarSequence analysisAdd BLAST28
Compositional biasi904 – 918PolarSequence analysisAdd BLAST15
Compositional biasi962 – 976PolarSequence analysisAdd BLAST15
Compositional biasi1144 – 1158PolarSequence analysisAdd BLAST15
Compositional biasi1171 – 1188PolarSequence analysisAdd BLAST18

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

WD repeatPROSITE-ProRule annotationARBA annotation

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.130.10.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR015943, WD40/YVTN_repeat-like_dom_sf
IPR001680, WD40_repeat
IPR017986, WD40_repeat_dom
IPR036322, WD40_repeat_dom_sf
IPR042622, Znf106
IPR036236, Znf_C2H2_sf

The PANTHER Classification System

More...PANTHERi		PTHR14435, PTHR14435, 3 hits

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00400, WD40, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00320, WD40, 3 hits

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF50978, SSF50978, 1 hit
SSF57667, SSF57667, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50082, WD_REPEATS_2, 1 hit
PS50294, WD_REPEATS_REGION, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A2I0TRD3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MYVIRYKYEG TNMKCVDSNH ECRVCRVTLV GLSAYAKHIS SQLHKDNVDA 
        60         70         80         90        100
HDRKEEGKEE AEEEYFDKEL IQLIKQRKEQ NRQAEPSCAN QELECDDRRS 
       110        120        130        140        150
QRRREERATY KEREAYDQSS WHHHNASQRD WKWEKDDYIS SRQGKFSHSQ 
       160        170        180        190        200
RNLNISRHSG GPRGRSGWHQ NVSGGSSNRH NYGNSGSVWH PSGRGGGTSN 
       210        220        230        240        250
WHHSARERNP TWHSEGTGHF SSWNSKSYGG NWKSSPHGAN GWNFGSSGDT 
       260        270        280        290        300
YSSEPIKYNK ERYAWQRQEK DIDVLSYRDR KNRSDSLDFT SDKLPSEGAL 
       310        320        330        340        350
DFCMSKQQES KTSRASGKSG SPSRDKIHRW TPYPSQKAAE QQPRSEDNVS 
       360        370        380        390        400
KNPDKMDSVF MPLTDSSMKG KTCEANVSLS KLKKCEASPP PNVTSDHLDS 
       410        420        430        440        450
CKVMKDCSSA EKPDKDDGRS NRMPSLKSPL LNITDRKLSS PKQDTNSLLK 
       460        470        480        490        500
NVKLLLSSTS GEEQNHLNAL NLETNGFSSY SSKLHGACAG NLQDNKDVLG 
       510        520        530        540        550
SNLGEPVNSL SDAEQNPKDV QSNHSLQNGP LRSCKDTSDQ KKEETGEALP 
       560        570        580        590        600
KNEFRLDSLE DVSDDDLAGS EKSEAKVEKL GSSVSPCLPC DTPEGKPATP 
       610        620        630        640        650
EKEDDEKPAP ASIASTDLKD STFQRQSTVS PSSSQDQLHV DLKISSQGGE 
       660        670        680        690        700
GDEEHVKSHD HFEMEGFENP SDPELQKGGS QSLGLLLPDL SKLGLPASLQ 
       710        720        730        740        750
RDLTRHISLK SKVGTHLPEP NLNNARRIRN VSGHRKSETE KESGLKPTLR 
       760        770        780        790        800
QILSASRRNV NWDQVIQQVT KKKQELGKGL PRFGIEMVPL VQNEQEGLEL 
       810        820        830        840        850
GEESDLSTLE GFQWEGISLA VPGSARKRSF SESSVIADRN PSAYSFFSEQ 
       860        870        880        890        900
AKTKESGQRQ IIAASHSHHI TSGSAGVEVD LKRKTASLPL SPFTSERTET 
       910        920        930        940        950
SGRRHSLQAT SEVTGLTKQD QESPEKRTPL LEKQNVLEIS EENRPASNNA 
       960        970        980        990       1000
SLLAVSNNID AATDSSCTSG TEQNDSQGVG KKRRATGEGS SPEIPSLERK 
      1010       1020       1030       1040       1050
NKRRKIKGKK EHSQVDQLLA ISLREEELSK SLQSVDSSLL QARAALQAAY 
      1060       1070       1080       1090       1100
VEVQRFLVLK QQITMEMSTL RSQRIQILQG LQETYEPSEL SEQLSCSVLS 
      1110       1120       1130       1140       1150
EKRNSKSQMA ADLIPAGSFP PLLDTLSSSV PPLVASVHVN TPSPFQSSVI 
      1160       1170       1180       1190       1200
TPTAPPDSSV QVKREPVSPK GSEENVSSAL QRSPSASQAE EVEQKDEVSS 
      1210       1220       1230       1240       1250
EPGEDEEPTE GSFEGHLAAV NAIQIFGNLL YTCSADKTVC AYNLVSRKCV 
      1260       1270       1280       1290       1300
AIFEGHTSKV NCLLVTQTNG KNAALYTGSS DHTINCYNIK TGELVRIYKG 
      1310       1320       1330       1340       1350
HNHAVTVVNI LGKVMVTACL DKFVRVYELQ SHDRLQVYGG HTDMIMCMTI 
      1360       1370       1380       1390       1400
HKSMWHGCSL IFGVVDHLKQ HLLTDHTNPN FQTLKCRWKN CDAFFTSRKG 

SKQSL
Length:1,405
Mass (Da):155,752
Last modified:February 28, 2018 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iF49B7D421B4EF9CD
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
KZ507693 Genomic DNA Translation: PKU36374.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KZ507693 Genomic DNA Translation: PKU36374.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR015943, WD40/YVTN_repeat-like_dom_sf
IPR001680, WD40_repeat
IPR017986, WD40_repeat_dom
IPR036322, WD40_repeat_dom_sf
IPR042622, Znf106
IPR036236, Znf_C2H2_sf
PANTHERiPTHR14435, PTHR14435, 3 hits
PfamiView protein in Pfam
PF00400, WD40, 1 hit
SMARTiView protein in SMART
SM00320, WD40, 3 hits
SUPFAMiSSF50978, SSF50978, 1 hit
SSF57667, SSF57667, 1 hit
PROSITEiView protein in PROSITE
PS50082, WD_REPEATS_2, 1 hit
PS50294, WD_REPEATS_REGION, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A2I0TRD3_LIMLA
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A2I0TRD3
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: February 28, 2018
Last sequence update: February 28, 2018
Last modified: August 12, 2020
This is version 11 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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