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Protein
Submitted name:

Far upstream element (FUSE) binding protein 1, transcript variant X1

Gene

FUBP1

Organism
Columba livia (Rock dove)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Far upstream element (FUSE) binding protein 1, transcript variant X1Imported
Gene namesi
Name:FUBP1Imported
ORF Names:A306_00005846Imported
OrganismiColumba livia (Rock dove)Imported
Taxonomic identifieri8932 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeColumbiformesColumbidaeColumba
Proteomesi
  • UP000053872 Componenti: Unassembled WGS sequence

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini69 – 139KHInterPro annotationAdd BLAST71
Domaini154 – 226KHInterPro annotationAdd BLAST73
Domaini244 – 314KHInterPro annotationAdd BLAST71
Domaini345 – 418KHInterPro annotationAdd BLAST74

Phylogenomic databases

KOiK13210

Family and domain databases

Gene3Di3.30.1370.10, 4 hits
InterProiView protein in InterPro
IPR015096 FUBP_C
IPR004087 KH_dom
IPR004088 KH_dom_type_1
IPR036612 KH_dom_type_1_sf
PfamiView protein in Pfam
PF09005 DUF1897, 2 hits
PF00013 KH_1, 4 hits
SMARTiView protein in SMART
SM00322 KH, 4 hits
SUPFAMiSSF54791 SSF54791, 4 hits

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

A0A2I0ME72-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNSNDYGYGG QKRPLEDGDD SWTSPSSTTH WEGMPSPFKD QPDAKKVAPQ
60 70 80 90 100
NDSFGNQLPP PPMHQQQRSV MTEEYKVPDG MVGFIIGRGG EQISRIQQES
110 120 130 140 150
GCKIQIAPDS GGLPERSCML TGTPESVQSA KRLLDQIVEK GRPTPGFHHG
160 170 180 190 200
DGPGNAVQEI MIPASKAGLV IGKGGETIKQ LQERAGVKMV MIQDGPQNTG
210 220 230 240 250
ADKPLRITGD PYKVQQAKEM VLELIRDQGG FREVRNEYGS RIGGNEGIDV
260 270 280 290 300
PIPRFAVGIV IGRNGEMIKK IQNDAGVRIQ FKPDDGTTPD RIAQITGPPD
310 320 330 340 350
RCQHAAEIIT DLLRSVQAGN PGGPGPGGRG RGRGQGNWNM GPPGGLQEFN
360 370 380 390 400
FIVPTGKTGL IIGKGGETIK SISQQSGARI ELQRNPPPNA DPNMKMFTIR
410 420 430 440 450
GTPQQIDYAR QLIEEKIGGP VNPLGPPVPH GPHGVVPGPH GPPGPPGPGA
460 470 480 490 500
PMGPYNPAPY NPGPPGPAPH GPPAPYAPQG WGNAYPHWQP PNPPDPGKPG
510 520 530 540 550
TDPNSAAWAA YYAHYYQQQA QPPPAAPPGG PATTQTNGQG DQPNPAPAGQ
560 570 580 590 600
VDYTKAWEEY YKKMGQAVPA PAGAPPGGQP DYSAAWAEYY RQQAAYYAQT
610
SPQGMPQHPP APQTFNHH
Length:618
Mass (Da):65,798
Last modified:February 28, 2018 - v1
Checksum:iE55E0BA79BA02B17
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A2I0ME71A0A2I0ME71_COLLI
Far upstream element (FUSE) binding...
FUBP1 A306_00005846
615Annotation score:
A0A2I0ME83A0A2I0ME83_COLLI
Far upstream element (FUSE) binding...
FUBP1 A306_00005846
597Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AKCR02000018 Genomic DNA Translation: PKK27980.1
RefSeqiXP_005507970.1, XM_005507913.1

Genome annotation databases

GeneIDi102096985
KEGGiclv:102096985

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AKCR02000018 Genomic DNA Translation: PKK27980.1
RefSeqiXP_005507970.1, XM_005507913.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi102096985
KEGGiclv:102096985

Organism-specific databases

CTDi8880

Phylogenomic databases

KOiK13210

Family and domain databases

Gene3Di3.30.1370.10, 4 hits
InterProiView protein in InterPro
IPR015096 FUBP_C
IPR004087 KH_dom
IPR004088 KH_dom_type_1
IPR036612 KH_dom_type_1_sf
PfamiView protein in Pfam
PF09005 DUF1897, 2 hits
PF00013 KH_1, 4 hits
SMARTiView protein in SMART
SM00322 KH, 4 hits
SUPFAMiSSF54791 SSF54791, 4 hits
ProtoNetiSearch...

Entry informationi

Entry nameiA0A2I0ME72_COLLI
AccessioniPrimary (citable) accession number: A0A2I0ME72
Entry historyiIntegrated into UniProtKB/TrEMBL: February 28, 2018
Last sequence update: February 28, 2018
Last modified: June 20, 2018
This is version 5 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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