Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

transcription factor RFX3 isoform X2

Gene

rfx3

Organism
Ictalurus punctatus (Channel catfish) (Silurus punctatus)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
transcription factor RFX3 isoform X2Imported
Gene namesi
Name:rfx3Imported
OrganismiIctalurus punctatus (Channel catfish) (Silurus punctatus)Imported
Taxonomic identifieri7998 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiSiluriformesIctaluridaeIctalurus
Proteomesi
  • UP000221080 Componenti: Genome assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini184 – 259RFX-type winged-helixInterPro annotationAdd BLAST76

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR003150 DNA-bd_RFX
IPR039779 RFX-like
IPR007668 RFX1_trans_act
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PANTHERiPTHR12619 PTHR12619, 1 hit
PfamiView protein in Pfam
PF04589 RFX1_trans_act, 1 hit
PF02257 RFX_DNA_binding, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS51526 RFX_DBD, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

A0A2D0SPW9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MQTPEAGADS SSTVPLQTSV PVQPAVTAQQ VPTQVPVQQQ AQTVQQVQHV
60 70 80 90 100
YPSQVQYVEE NSSVYTNGTI RTYSYSEPQL YSQNSSGSYF DTQGAAPQVS
110 120 130 140 150
TVVTSHSLAN NGSTNGGLAM GLTGGQIISS SGAYLIGSNA MDGSAPHTAA
160 170 180 190 200
QTTRASPATI EMAIETLQKS EGLSSQRSSL LNSHLQWLLD NYETAEGVSL
210 220 230 240 250
PRSTLYSHYL RHCQEQKLDP VNAASFGKLI RSIFMGLRTR RLGTRGNSKY
260 270 280 290 300
HYYGIRVKPD SPLNRLQEDM QYMALRQQPV HQKQRFKSVQ KADSFLGDNY
310 320 330 340 350
PSSGHHHPNA AEQTVLAQSQ HHQQFLDASR AIPEFVELDL GENGVDGVGM
360 370 380 390 400
EDIKALQILY REHCEAILDV VVNLQFSLIE KLWQTFWRYC PSNSIEGITM
410 420 430 440 450
TENSGMSEIE GRLPRARLLL LCQSEAVLKW MNTCDHLMYQ ALVEILIPDV
460 470 480 490 500
LRPIPSALTQ AIRNFAKSLE GWLTNAMSAI PQKMIQTKVS AVSAFAQTLR
510 520 530 540 550
RYTSLNHLAQ AARAVLQNTS QINQMLSDLN RVDFANVQEQ ASWVCQCEEG
560 570 580 590 600
MVQRLEQDFK ATLQQQSSLE QWATWLDNVV SQVLKPYEDR PSFPKAARQF
610 620 630 640 650
LLKWSFYSSM VIRDLTLRSA ASFGSFHLIR LLYDEYMFYL VEHRVAQATG
660 670 680 690 700
ETPIGVMGEF DDLNTMSPTN IDKDEVSEMD SELDEEMQEA GEPLAKQEKA
710 720 730 740 750
EAEVIQVLQV GTMEDGSSAV VGVVQPDMLG TMGMQQSTIR HCSGAGNAYA

SV
Length:752
Mass (Da):83,482
Last modified:December 20, 2017 - v1
Checksum:i629EEBB3024F48EA
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A2D0SQG7A0A2D0SQG7_ICTPU
transcription factor RFX3 isoform X...
rfx3
767Annotation score:
A0A2D0SPX5A0A2D0SPX5_ICTPU
transcription factor RFX3 isoform X...
rfx3
742Annotation score:

Sequence databases

RefSeqiXP_017344742.1, XM_017489253.1
XP_017344743.1, XM_017489254.1
XP_017344745.1, XM_017489256.1
XP_017344746.1, XM_017489257.1

Genome annotation databases

GeneIDi108277008

Similar proteinsi

Cross-referencesi

Sequence databases

RefSeqiXP_017344742.1, XM_017489253.1
XP_017344743.1, XM_017489254.1
XP_017344745.1, XM_017489256.1
XP_017344746.1, XM_017489257.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi108277008

Organism-specific databases

CTDi5991

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR003150 DNA-bd_RFX
IPR039779 RFX-like
IPR007668 RFX1_trans_act
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PANTHERiPTHR12619 PTHR12619, 1 hit
PfamiView protein in Pfam
PF04589 RFX1_trans_act, 1 hit
PF02257 RFX_DNA_binding, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS51526 RFX_DBD, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A2D0SPW9_ICTPU
AccessioniPrimary (citable) accession number: A0A2D0SPW9
Entry historyiIntegrated into UniProtKB/TrEMBL: December 20, 2017
Last sequence update: December 20, 2017
Last modified: November 7, 2018
This is version 5 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again