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Protein
Submitted name:

myocyte-specific enhancer factor 2D isoform X8

Gene

mef2d

Organism
Ictalurus punctatus (Channel catfish) (Silurus punctatus)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
myocyte-specific enhancer factor 2D isoform X8Imported
Gene namesi
Name:mef2dImported
OrganismiIctalurus punctatus (Channel catfish) (Silurus punctatus)Imported
Taxonomic identifieri7998 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiSiluriformesIctaluridaeIctalurus
Proteomesi
  • UP000221080 Componenti: Genome assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Interactioni

GO - Molecular functioni

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 61MADS-boxInterPro annotationAdd BLAST61

Family and domain databases

CDDicd00265 MADS_MEF2_like, 1 hit
Gene3Di3.40.1810.10, 1 hit
InterProiView protein in InterPro
IPR022102 HJURP_C
IPR033896 MADS_MEF2-like
IPR002100 TF_MADSbox
IPR036879 TF_MADSbox_sf
PfamiView protein in Pfam
PF12347 HJURP_C, 1 hit
PF00319 SRF-TF, 1 hit
PRINTSiPR00404 MADSDOMAIN
SMARTiView protein in SMART
SM00432 MADS, 1 hit
SUPFAMiSSF55455 SSF55455, 1 hit
PROSITEiView protein in PROSITE
PS00350 MADS_BOX_1, 1 hit
PS50066 MADS_BOX_2, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 7 potential isoforms that are computationally mapped.iShow all

A0A2D0RDP2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGRKKIQIQR ITDERNRQVT FTKRKFGLMK KAYELSVLCD CEIALIIFNH
60 70 80 90 100
SNKLFQYAST DMDKVLLKYT EYNEPHESRT NADIIETLRK KGFNGCNSPE
110 120 130 140 150
PDGDDSIDQS PLQDDKFRKN EELDILFRRY GSTVPAPTFS MPVTVPVSSQ
160 170 180 190 200
SPLPFSNPSS LVTTSFVTST LTDPRLLSPQ QPQLQRNTVS PGLPQRPASA
210 220 230 240 250
GALLGGDLNN SNGACPSPVA NGYISARASP GLLSVSSVSN GNSMGKVVTA
260 270 280 290 300
KSPPPSSPQM VSNRKPDLRV ITSQSSKSLM QLNAQRLGAS QVTQPLTTPV
310 320 330 340 350
VSVATPSLLT PFSMPTAYNT EYQLTSADLT ALQAFTPQGA LLPSNMTTWQ
360 370 380 390 400
QQQPSVSQQP QQQPSISQQQ QQQPQQISLA SLSNLVPVGP IPHGATLTVN
410 420 430 440 450
TNPSVSIKSE PVSPNRERTT PSSTAALSLS QYPGTVRVDA LGHSPLHTIS
460 470 480 490 500
SSSNSSERDE TGQPRPPDFS VAALGPIRAA GDQMAFAESQ QSANAKRMRL

DT
Length:502
Mass (Da):54,187
Last modified:December 20, 2017 - v1
Checksum:iADFC985AB771EF2E
GO

Computationally mapped potential isoform sequencesi

There are 7 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A2D0RDI5A0A2D0RDI5_ICTPU
myocyte-specific enhancer factor 2D...
mef2d
553Annotation score:
A0A2D0REC2A0A2D0REC2_ICTPU
myocyte-specific enhancer factor 2D...
mef2d
530Annotation score:
A0A2D0RE88A0A2D0RE88_ICTPU
myocyte-specific enhancer factor 2D...
mef2d
553Annotation score:
A0A2D0RCH8A0A2D0RCH8_ICTPU
myocyte-specific enhancer factor 2D...
mef2d
513Annotation score:
A0A2D0RE98A0A2D0RE98_ICTPU
myocyte-specific enhancer factor 2D...
mef2d
552Annotation score:
A0A2D0RDL8A0A2D0RDL8_ICTPU
myocyte-specific enhancer factor 2D...
mef2d
536Annotation score:
A0A2D0RCE9A0A2D0RCE9_ICTPU
myocyte-specific enhancer factor 2D...
mef2d
543Annotation score:

Sequence databases

RefSeqiXP_017328251.1, XM_017472762.1
UniGeneiIpu.27513

Genome annotation databases

GeneIDi108268030

Similar proteinsi

Entry informationi

Entry nameiA0A2D0RDP2_ICTPU
AccessioniPrimary (citable) accession number: A0A2D0RDP2
Entry historyiIntegrated into UniProtKB/TrEMBL: December 20, 2017
Last sequence update: December 20, 2017
Last modified: April 25, 2018
This is version 5 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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