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Protein
Submitted name:

collagen alpha-1(XVIII) chain isoform X1

Gene

col18a1

Organism
Ictalurus punctatus (Channel catfish) (Silurus punctatus)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
collagen alpha-1(XVIII) chain isoform X1Imported
Gene namesi
Name:col18a1Imported
OrganismiIctalurus punctatus (Channel catfish) (Silurus punctatus)Imported
Taxonomic identifieri7998 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiSiluriformesIctaluridaeIctalurus
Proteomesi
  • UP000221080 Componenti: Genome assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21Sequence analysisAdd BLAST21
ChainiPRO_501315268022 – 1632Sequence analysisAdd BLAST1611

Keywords - PTMi

Disulfide bondSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini197 – 385LAM_G_DOMAINInterPro annotationAdd BLAST189

Keywords - Domaini

CollagenSAAS annotationImported, SignalSequence analysis

Phylogenomic databases

KOiK06823

Family and domain databases

CDDicd00247 Endostatin-like, 1 hit
Gene3Di3.10.100.10, 1 hit
InterProiView protein in InterPro
IPR016186 C-type_lectin-like/link_sf
IPR039075 COL18A1
IPR008160 Collagen
IPR010515 Collagenase_NC10/endostatin
IPR013320 ConA-like_dom_sf
IPR016187 CTDL_fold
IPR001791 Laminin_G
PANTHERiPTHR45362 PTHR45362, 3 hits
PfamiView protein in Pfam
PF01391 Collagen, 5 hits
PF06482 Endostatin, 1 hit
SMARTiView protein in SMART
SM00210 TSPN, 1 hit
SUPFAMiSSF49899 SSF49899, 1 hit
SSF56436 SSF56436, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 8 potential isoforms that are computationally mapped.iShow all

A0A2D0R542-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLNKMSSLGL WLGVLVGLCI GHSHGWFWYD DSKDNSESTP TPAYVTTLGT
60 70 80 90 100
TLPTTVPTSK PLRTEGTDAS GVDVLAKGEE MGSGGGSRVG SALNEQSKPE
110 120 130 140 150
VEHGSVLNAD SGSGSLSVSV SGVDPESGPT LKPANGSPLW ENQEVNNVQA
160 170 180 190 200
NLSIGMDNNR VLAADTELEK NLTKVDLSQM DEDRGNVSAS PDDLITTVSL
210 220 230 240 250
SQLIGYPLPE GVTKSYDPDS SGFVFDQNSK TGQLARAHLP TSFFRDFSLL
260 270 280 290 300
FNVKPTSTKA GVIFSITDTN QKIMYVGVKL SAVENGKQKI VLFYTEPDSQ
310 320 330 340 350
ASYEAASFTV PSLVNYWARF SISVMDDKVT LYPSCDSEPK VLPFERSPDE
360 370 380 390 400
MELESGAGIF VGQAGGADDD KFVGIIGDLK VVGDPHEAER YCEEEEDDSD
410 420 430 440 450
GASGDYGSGD YKNKHTASTT SQPSNPLQQP PVKPTVVTVS KDVPKGSVDG
460 470 480 490 500
YGRISGSYPD SHRMSGSHGN SGRSSGTNDY SSGTYDNSHR TFGSYDNSQP
510 520 530 540 550
TSDTHDDSWH TSDSAAGTRT SVLNQDNKRT SDRTADSGRI SSSGKVTGLS
560 570 580 590 600
ESSRHTYTVS TGGRGVSGSS AERGKSVELR PGTSSSQVLA AAGAKGEKGE
610 620 630 640 650
RGPKGDRGPA GPKGEAGSMT GSGGGAKGEK GSLGEKGMKG AAGFGYPGVK
660 670 680 690 700
GDQGPPGPQG PPGPPGPSAD VVERGDGSVV VQGPRGPPGP AGPAGPEGEP
710 720 730 740 750
GDPGEDGSAG PAGPRGFPGT PGDPGAKGEK GDRGESVPGP RGPPGLPGPP
760 770 780 790 800
GPPSRSDSPT FLDMEGSGFG DLEGVRGLPG IPGPPGPPGP PGPPGPVGLT
810 820 830 840 850
NVSHATVSGV SGPSGPPGKD GAPGQPGLPG LPGTEGKPGL PGPKGEKGDT
860 870 880 890 900
GELGLPGVVG EKGAQGLPGY PGAPGQTGLA GLPGPMGPVG PPGPPGPSYH
910 920 930 940 950
AGFDDMEGSG VNFFGGVPGV RGPEGKQGPP GLPGQPGIPG QKGEKGSEGL
960 970 980 990 1000
PGISGHPGLD GFPGPQGAQG ERGFKGERGD PGRDGVGHPG LPGPPGPPGQ
1010 1020 1030 1040 1050
IIYRSADGSG IPGQAGFPGP MGPKGERGDP GAPGNGIKGE KGEPGVVIGP
1060 1070 1080 1090 1100
DGSPLFLGAT AGQKGERGPA GSVGPPGPYG PPGMKGEIGM PGRPGRPGIL
1110 1120 1130 1140 1150
GSKGEKGESG SGYSYPGPPG PPGPPGPPGP LAYPSAVDRF GRYEDSRTVY
1160 1170 1180 1190 1200
PGAKGEKGDR GVPGLPGTPG NFDIYTLKNE LKGERGDTGL KGEKGEPGVQ
1210 1220 1230 1240 1250
YGSHYGGVQG PPGPPGPRGD SIRGPPGPQG PPGPQGVGYD GRPGNPGPPG
1260 1270 1280 1290 1300
PPGPPGSPSL PGAHRPTVSI PGPPGPPGPP GLPGQNAGVT ILRTFDLMLA
1310 1320 1330 1340 1350
TAQRQPEGAL IYIMDKSDLY VRVRDGVRQV MLGTYNPFYR DSHNEVAAVQ
1360 1370 1380 1390 1400
PPPVVQYSQS HSANNGAEHY SHVDSPIRQP DSHGSEHSQP AIDPQYNTHY
1410 1420 1430 1440 1450
SSHPDTRYPP HPDYRFPART DRPYIPVQPE RYPIPPVLRP STPIHQPEDH
1460 1470 1480 1490 1500
VHTSGPGLHL IALNSPQVGN MRGIRGADFL CFQQARAAGL KGTFRAFLSS
1510 1520 1530 1540 1550
KLQDLYSIVR KSDRNTLPIV NLKDQVLFSS WESLFGDSEG RLKTSIPIYS
1560 1570 1580 1590 1600
FDGRDILRDS AWPEKMIWHG SSGKGHRQMD NYCETWRTSD LAVMGLASSL
1610 1620 1630
QAGQILQQKP SSCSNNFIVL CIENSYITQS KK
Length:1,632
Mass (Da):167,561
Last modified:December 20, 2017 - v1
Checksum:iAEA85C2BB2690C9D
GO

Computationally mapped potential isoform sequencesi

There are 8 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A2D0R6Q2A0A2D0R6Q2_ICTPU
collagen alpha-1(XVIII) chain isofo...
col18a1
1,513Annotation score:
A0A2D0R6Q7A0A2D0R6Q7_ICTPU
collagen alpha-1(XVIII) chain isofo...
col18a1
1,461Annotation score:
A0A2D0R7D7A0A2D0R7D7_ICTPU
collagen alpha-1(XVIII) chain isofo...
col18a1
1,462Annotation score:
A0A2D0R7D2A0A2D0R7D2_ICTPU
collagen alpha-1(XVIII) chain isofo...
col18a1
1,631Annotation score:
A0A2D0R547A0A2D0R547_ICTPU
collagen alpha-1(XVIII) chain isofo...
col18a1
1,512Annotation score:
A0A2D0R551A0A2D0R551_ICTPU
collagen alpha-1(XVIII) chain isofo...
col18a1
1,631Annotation score:
A0A2D0R586A0A2D0R586_ICTPU
collagen alpha-1(XVIII) chain isofo...
col18a1
1,490Annotation score:
A0A2D0R558A0A2D0R558_ICTPU
collagen alpha-1(XVIII) chain isofo...
col18a1
1,494Annotation score:

Sequence databases

RefSeqiXP_017325727.1, XM_017470238.1
UniGeneiIpu.2750

Genome annotation databases

GeneIDi108266642
KEGGiipu:108266642

Similar proteinsi

Entry informationi

Entry nameiA0A2D0R542_ICTPU
AccessioniPrimary (citable) accession number: A0A2D0R542
Entry historyiIntegrated into UniProtKB/TrEMBL: December 20, 2017
Last sequence update: December 20, 2017
Last modified: September 12, 2018
This is version 6 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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