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Protein
Submitted name:

protein VPRBP isoform X2

Gene

dcaf1

Organism
Ictalurus punctatus (Channel catfish) (Silurus punctatus)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
protein VPRBP isoform X2Imported
Gene namesi
Name:dcaf1Imported
OrganismiIctalurus punctatus (Channel catfish) (Silurus punctatus)Imported
Taxonomic identifieri7998 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiSiluriformesIctaluridaeIctalurus
Proteomesi
  • UP000221080 Componenti: Genome assembly

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini863 – 895LisHInterPro annotationAdd BLAST33

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili5 – 25Sequence analysisAdd BLAST21
Coiled coili1411 – 1434Sequence analysisAdd BLAST24

Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR016024 ARM-type_fold
IPR006594 LisH
IPR033270 VPRBP/DCAF1
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR036322 WD40_repeat_dom_sf
PANTHERiPTHR13129 PTHR13129, 1 hit
SMARTiView protein in SMART
SM00667 LisH, 1 hit
SUPFAMiSSF48371 SSF48371, 1 hit
SSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50896 LISH, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All

A0A2D0QZT7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MASAIEGSVD SKAELTALLE QWEREQQGNT QDLVNILTKI SELVERETEE
60 70 80 90 100
YHKADPDPFD DRHPGLYPGR ANPECMLGHL LKILFKNDDF MNALVNSYVM
110 120 130 140 150
TSREVPLNTA ACRLLLNIMP GLETAVVFQE KEGIVERLFK WAREAEEPLR
160 170 180 190 200
IYATGLLGGA MENQDIAANY REENSVLVPL MLQRLREIQE KDAESRKDFK
210 220 230 240 250
RPSLRKSMEP LLPLDEEAVD GKFSPSPSRI HSENNTFGHE SDGAVSPEHS
260 270 280 290 300
LTKSSSRVHS GVKGVMKLAV PHQSELENPG EGARDFRKRM EQENGRKAKQ
310 320 330 340 350
KLNFSLPEPE RNFSELSNSS WSEMSPWVIG NSYHLYPLTA GIEQRLILQY
360 370 380 390 400
LTPLGEYQEL LAVFMQLRAR ELLMHYMDLK QTNDVQLTFE ALKYLASLLL
410 420 430 440 450
HKKFAAEFVA HGGVQKLLEI PRPSMAATGV SLCLYYLAYN QDAMERVCML
460 470 480 490 500
PHSLLAEVVS YTLWLLECSH ASGCCHATMF FSICFTFRAV LELFDNQDGL
510 520 530 540 550
RRLVNLISTL EILNPEDQGA LLSDDEIFSS RQTAKHTCMA LRRYFEAHLA
560 570 580 590 600
IKVEQVKQSL QRTEGGALIH PQPYYKPCSY TRDQVVEMVE FLIEHGPVRL
610 620 630 640 650
YWEPAEVFHK LSCVQLLLQL ISIACDWRTY YGRSDTVRYA LDILSILTVI
660 670 680 690 700
PKTQLLLAEN VSVLDEGGST ISTVGMSIVL VVAEGEVFVN DAEIQKSALQ
710 720 730 740 750
VVINCVCAPD KRISSIGKFI SGAPRRRLPQ SHRTSESVLA KMWNVVQSNN
760 770 780 790 800
GIKVLLSLLT IKMPITDADQ IRALACKALV GLARSTTVRQ IISKLPLFSS
810 820 830 840 850
GQIQQLMKEP VLQDKRNDHV RFCKYAAELI EQVSGKPLLI GTDVSLARLQ
860 870 880 890 900
RANVVAQTRI AFPEKELLLL IRNHLLSKGL TDTASALTKE ADLPMGIHSH
910 920 930 940 950
AHASVAPFSQ SVSTPPTPTA IPRSPRLANG VAARLGGHAS HVTTSSHHLQ
960 970 980 990 1000
PRPSTSQLPP PAPPTSSHHS TVSLVGRIVF SRERPTTYAA GLKKPRVLRQ
1010 1020 1030 1040 1050
KSDHGAFSQS PAMKKQLDRH LPSPPALDSI ITEYLREQHA RCKNPVTTCP
1060 1070 1080 1090 1100
PFSLFMPHQC PEPKQRCQAP TNFTARHTRR VAYPKYGGVD GGCFDRQLIF
1110 1120 1130 1140 1150
SRFRPISVFR EAEEDESGFM CCAFSARERF LMLGTCTGQL KLYNVFGGQE
1160 1170 1180 1190 1200
EASYSCHSSA ITHLEPSRDG SLLLTSASWS YPLSALWGMK SVFIMKHSFL
1210 1220 1230 1240 1250
DDHYVEFSKL SQDRVIGTKE HIAHIYDIQT GQKTLTLNNP DLANNYKRNC
1260 1270 1280 1290 1300
ATFNPTDDLV LNDGVMWDVR SAQAIHKFDK FNMNISGVFH PNGLEVIINT
1310 1320 1330 1340 1350
EIWDLRTFHL LHTVPALDQC RIVFNNNGTV IYGAMLQADD EDEMMEQQMK
1360 1370 1380 1390 1400
SPFGSSFRTF DATDYKPIAT IDVKRNIFDL CTDTKDCYLA VIENQDSINM
1410 1420 1430 1440 1450
DTVCRLYGVG RQRLAEEEED EEDQEDEDQE DEDDDDDSDD DMDDIDTDPL
1460 1470 1480 1490 1500
MAELENENNG EEEEDGEQDF SPSDDEEVAR LLEEDGEDDD DDDDDDDDDD
1510 1520 1530
DDEEDDSEDN EGDVELVMDN NSSDNSDLED DIILSLNE
Length:1,538
Mass (Da):172,969
Last modified:December 20, 2017 - v1
Checksum:iE073D2A1483CA26B
GO

Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A2D0QZU9A0A2D0QZU9_ICTPU
protein VPRBP isoform X1
dcaf1
1,539Annotation score:
A0A2D0R2A3A0A2D0R2A3_ICTPU
protein VPRBP isoform X4
dcaf1
1,381Annotation score:
A0A2D0R047A0A2D0R047_ICTPU
protein VPRBP isoform X3
dcaf1
1,535Annotation score:

Sequence databases

RefSeqiXP_017323918.1, XM_017468429.1
UniGeneiIpu.10249

Genome annotation databases

GeneIDi108265762

Similar proteinsi

Cross-referencesi

Sequence databases

RefSeqiXP_017323918.1, XM_017468429.1
UniGeneiIpu.10249

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi108265762

Organism-specific databases

CTDi9730

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR016024 ARM-type_fold
IPR006594 LisH
IPR033270 VPRBP/DCAF1
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR036322 WD40_repeat_dom_sf
PANTHERiPTHR13129 PTHR13129, 1 hit
SMARTiView protein in SMART
SM00667 LisH, 1 hit
SUPFAMiSSF48371 SSF48371, 1 hit
SSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50896 LISH, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A2D0QZT7_ICTPU
AccessioniPrimary (citable) accession number: A0A2D0QZT7
Entry historyiIntegrated into UniProtKB/TrEMBL: December 20, 2017
Last sequence update: December 20, 2017
Last modified: November 7, 2018
This is version 9 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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