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Protein
Submitted name:

synemin isoform X2

Gene

synm

Organism
Ictalurus punctatus (Channel catfish) (Silurus punctatus)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
synemin isoform X2Imported
Gene namesi
Name:synmImported
OrganismiIctalurus punctatus (Channel catfish) (Silurus punctatus)Imported
Taxonomic identifieri7998 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiSiluriformesIctaluridaeIctalurus
Proteomesi
  • UP000221080 Componenti: Genome assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Intermediate filamentPROSITE-ProRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini11 – 318IF rodInterPro annotationAdd BLAST308

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili15 – 49Sequence analysisAdd BLAST35
Coiled coili62 – 96Sequence analysisAdd BLAST35
Coiled coili111 – 138Sequence analysisAdd BLAST28
Coiled coili195 – 250Sequence analysisAdd BLAST56
Coiled coili255 – 289Sequence analysisAdd BLAST35
Coiled coili863 – 883Sequence analysisAdd BLAST21

Sequence similaritiesi

Belongs to the intermediate filament family.PROSITE-ProRule annotationSAAS annotation

Keywords - Domaini

Coiled coilPROSITE-ProRule annotationSAAS annotation

Family and domain databases

InterProiView protein in InterPro
IPR001664 IF
IPR018039 IF_conserved
IPR039008 IF_rod_dom
PANTHERiPTHR23239 PTHR23239, 2 hits
PfamiView protein in Pfam
PF00038 Filament, 1 hit
SMARTiView protein in SMART
SM01391 Filament, 1 hit
PROSITEiView protein in PROSITE
PS00226 IF_ROD_1, 1 hit
PS51842 IF_ROD_2, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

A0A2D0QUJ4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFQFKRSFEG EKLQLQELNQ RLGQYLSRAK LLEQENARLV AEINTIRHNR
60 70 80 90 100
SEEWENTRMA ELREMRRLVE QLSLEKSRAE MEREKLRREL QLIQAMRSDE
110 120 130 140 150
SAFSRGLDGE LKGCEKQLQN ALQTNSALEK RMFQLQNECA LFHDAHRNEV
160 170 180 190 200
ARLRDQVHTR VLPVVTRTYH GPPAFTTEEV QNYALSLSES WMETFEVYRQ
210 220 230 240 250
QVEEMEESIK ADQARLEDIR REKVEYASEL NKLRVEMEKH SQMQLELEQH
260 270 280 290 300
LMDMQEKFRK DVSQYQIIVE ELEQERMFLA NTISEKLKDH HELLQVKMGL
310 320 330 340 350
GMEVAAYRAL LEGEGKHAQM RSDQYSRERI IDIKMPAKPY TQRGSTMTAS
360 370 380 390 400
RPEVRRNLIG YGFWNTEPIS SMRMSTVSSQ VDSHKNSRIL PITISNHAQK
410 420 430 440 450
SPAARRDMLA FTKAKQASST PSATRPDVSA SKTSKEVMEE QRVIINSVSK
460 470 480 490 500
SLPRSSPDLF QTEIQNKSFP TASSTVELKS VRVVAPPMMS LKSNAETPQK
510 520 530 540 550
VVKKGERDDE RTEADHVKAT VQPDATPFVQ EKESNHEEER DLKDSGNVGP
560 570 580 590 600
KVFAGEENVL DSVSMEEIIE KFIKPAGLDT KISSSPDSKI TYHVEKTEQE
610 620 630 640 650
DGSTKTQIVL QTKVEEDLDV SDNPALEELL SKGVHKVSLE DLEGTPTGSM
660 670 680 690 700
IQNLLRLGLE SESLENKSVK VEIMEAPLEC HSDEGEAEIE ETVEVKYKPS
710 720 730 740 750
FQPSSTFFHI EEPENEPQPA EQHGNTDESV KASENFKSGF VQVQEVSRDE
760 770 780 790 800
SLPYYSQGQE TQEYFVSTPE DNMSGSEEGG GFMSYGHYGV VEDLSDERYY
810 820 830 840 850
QEEGLPTNRR YSDEGENNRE SSEYVKRDTT GIPECIIEEE VHVSPRMQES
860 870 880 890 900
MLEILKEESL DPREQLKGAL EQLEGTVSGA LKEELVSFTQ AGQSSENLSV
910 920 930 940 950
SIQKVPQSPD NGTTTFVAEL NISQSLEDSG LLQNEADDLS QERVMAALRP
960 970 980 990 1000
SISDLHQAHS AGAGGEYTIR LSTEEIQKGE MPWMTNLEET EGLCSGSEIS
1010 1020 1030 1040 1050
KTEKVIRLGP NERSFTFQMD INNSASATGI EGMDSQDQKG NGATVQEFQQ
1060 1070
KKETDPSLKV YQEKRIATVY LERPQED
Length:1,077
Mass (Da):122,275
Last modified:December 20, 2017 - v1
Checksum:i651E2D119F5691FA
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A2D0QUJ8A0A2D0QUJ8_ICTPU
synemin isoform X1
synm
1,095Annotation score:

Sequence databases

RefSeqiXP_017322093.1, XM_017466604.1
UniGeneiIpu.83269

Genome annotation databases

GeneIDi108264757

Similar proteinsi

Cross-referencesi

Sequence databases

RefSeqiXP_017322093.1, XM_017466604.1
UniGeneiIpu.83269

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi108264757

Organism-specific databases

CTDi23336

Family and domain databases

InterProiView protein in InterPro
IPR001664 IF
IPR018039 IF_conserved
IPR039008 IF_rod_dom
PANTHERiPTHR23239 PTHR23239, 2 hits
PfamiView protein in Pfam
PF00038 Filament, 1 hit
SMARTiView protein in SMART
SM01391 Filament, 1 hit
PROSITEiView protein in PROSITE
PS00226 IF_ROD_1, 1 hit
PS51842 IF_ROD_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A2D0QUJ4_ICTPU
AccessioniPrimary (citable) accession number: A0A2D0QUJ4
Entry historyiIntegrated into UniProtKB/TrEMBL: December 20, 2017
Last sequence update: December 20, 2017
Last modified: June 20, 2018
This is version 6 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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