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Protein
Submitted name:

T-box transcription factor TBX3 isoform X2

Gene

tbx3

Organism
Ictalurus punctatus (Channel catfish) (Silurus punctatus)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.PROSITE-ProRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
T-box transcription factor TBX3 isoform X2Imported
Gene namesi
Name:tbx3Imported
OrganismiIctalurus punctatus (Channel catfish) (Silurus punctatus)Imported
Taxonomic identifieri7998 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiSiluriformesIctaluridaeIctalurus
Proteomesi
  • UP000221080 Componenti: Genome assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini311 – 392TBXInterPro annotationAdd BLAST82

Family and domain databases

CDDicd00182 TBOX, 1 hit
Gene3Di2.60.40.820, 1 hit
InterProiView protein in InterPro
IPR008967 p53-like_TF_DNA-bd
IPR036960 T-box_sf
IPR022582 TBX
IPR002070 TF_Brachyury
IPR001699 TF_T-box
IPR018186 TF_T-box_CS
PANTHERiPTHR11267 PTHR11267, 1 hit
PfamiView protein in Pfam
PF00907 T-box, 1 hit
PF12598 TBX, 1 hit
PRINTSiPR00938 BRACHYURY
PR00937 TBOX
SMARTiView protein in SMART
SM00425 TBOX, 1 hit
SUPFAMiSSF49417 SSF49417, 1 hit
PROSITEiView protein in PROSITE
PS01283 TBOX_1, 1 hit
PS01264 TBOX_2, 1 hit
PS50252 TBOX_3, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

A0A2D0QC04-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MQYLDFWMNF LMRDPVIQGS SMAYHPFLPN RGPEFAMSAM LGHQPPFFPA
60 70 80 90 100
LALPPNGSLS LPGTLGKPIM EQLMGTADSG LHFSSLGHQA AAAHLRPLKT
110 120 130 140 150
LEPEEEVEDD PKVHLEAKEL WELFHKCGTE MVITKSGRRM FPPFKVRCTG
160 170 180 190 200
LDKKAKYILL MDIVAADDCR YKFHNSRWMV AGKADPEMPK RMYIHPDSPA
210 220 230 240 250
TGEQWMSKVV NFHKLKLTNN ISDKHGFTIL NSMHKYQPRF HIVRANDILK
260 270 280 290 300
LPYSTFRTYV FPETDFIAVT AYQNDKITQL KIDHNPFAKG FRDTGNGRRE
310 320 330 340 350
KRKQLALQSL RSYEEPQKKE NGTSDDSSGE QTSFKCFRQA SSPAVATVGR
360 370 380 390 400
QSFKDFCDSD EDSDEDDRDA NPKEGPESSK ISTTTSEDAK EREGALNKLS
410 420 430 440 450
SFGDGDSRLR ESRTEKSRAD SRQSPVTLIS STTRSGEELK SPAGEQPKLD
460 470 480 490 500
ECRSVSKESY TTPLTVQTDA GAHLHQSHLH SFGFPPGLAG QQFFNHLGSA
510 520 530 540 550
HPFLLHPSQF NLGGAFSNMA AGMGPLLAAV SSGGVTSMDT TSMASPSQSL
560 570 580 590 600
AGAPGVPFHL QQHVLASQGL AMSPFGGLFP YPYTYMAAAA AASSAATSSV
610 620 630 640 650
HRHPFLNAVR PRLRYSPYSL PSVPDSTLLT TAIPPIDLKG DVMASSPVSA
660 670 680 690 700
TLDSTSEVTS RSSTISSGSV SLSPKTGSDK DSNNDLQSIQ RLVSGLDSKQ

DRARSVSP
Length:708
Mass (Da):77,545
Last modified:December 20, 2017 - v1
Checksum:i2D1190F751B0B94A
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A2D0QD34A0A2D0QD34_ICTPU
T-box transcription factor TBX3 iso...
tbx3
714Annotation score:
A0A2D0QD42A0A2D0QD42_ICTPU
T-box transcription factor TBX3 iso...
tbx3
589Annotation score:

Sequence databases

RefSeqiXP_017316213.1, XM_017460724.1
UniGeneiIpu.21608

Genome annotation databases

GeneIDi108260432

Similar proteinsi

Cross-referencesi

Sequence databases

RefSeqiXP_017316213.1, XM_017460724.1
UniGeneiIpu.21608

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi108260432

Organism-specific databases

CTDi6926

Family and domain databases

CDDicd00182 TBOX, 1 hit
Gene3Di2.60.40.820, 1 hit
InterProiView protein in InterPro
IPR008967 p53-like_TF_DNA-bd
IPR036960 T-box_sf
IPR022582 TBX
IPR002070 TF_Brachyury
IPR001699 TF_T-box
IPR018186 TF_T-box_CS
PANTHERiPTHR11267 PTHR11267, 1 hit
PfamiView protein in Pfam
PF00907 T-box, 1 hit
PF12598 TBX, 1 hit
PRINTSiPR00938 BRACHYURY
PR00937 TBOX
SMARTiView protein in SMART
SM00425 TBOX, 1 hit
SUPFAMiSSF49417 SSF49417, 1 hit
PROSITEiView protein in PROSITE
PS01283 TBOX_1, 1 hit
PS01264 TBOX_2, 1 hit
PS50252 TBOX_3, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A2D0QC04_ICTPU
AccessioniPrimary (citable) accession number: A0A2D0QC04
Entry historyiIntegrated into UniProtKB/TrEMBL: December 20, 2017
Last sequence update: December 20, 2017
Last modified: September 12, 2018
This is version 5 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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