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UniProtKB - A0A287X9V0 (A0A287X9V0_HORVV)

Entry version 13 (12 Aug 2020)
Sequence version 1 (22 Nov 2017)
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Protein

DYW_deaminase domain-containing protein

Gene
N/A
Organism
Hordeum vulgare subsp. vulgare (Domesticated barley)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
DYW_deaminase domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHordeum vulgare subsp. vulgare (Domesticated barley)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri112509 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › Liliopsida › Poales › Poaceae › BOP clade › Pooideae › Triticodae › Triticeae › Hordeinae › Hordeum ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000011116 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		A0A287X9V0, baseline and differential

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati11 – 41PPRPROSITE-ProRule annotationAdd BLAST31
Repeati78 – 112PPRPROSITE-ProRule annotationAdd BLAST35
Repeati142 – 178PPRPROSITE-ProRule annotationAdd BLAST37
Repeati216 – 250PPRPROSITE-ProRule annotationAdd BLAST35
Repeati317 – 348PPRPROSITE-ProRule annotationAdd BLAST32
Repeati349 – 379PPRPROSITE-ProRule annotationAdd BLAST31
Repeati420 – 450PPRPROSITE-ProRule annotationAdd BLAST31
Repeati452 – 486PPRPROSITE-ProRule annotationAdd BLAST35
Repeati487 – 521PPRPROSITE-ProRule annotationAdd BLAST35
Repeati524 – 554PPRPROSITE-ProRule annotationAdd BLAST31
Repeati590 – 624PPRPROSITE-ProRule annotationAdd BLAST35
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini626 – 737DYW_deaminaseInterPro annotationAdd BLAST112

Phylogenomic databases

Identification of Orthologs from Complete Genome Data

More...OMAi		KEVHSFA

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.25.40.10, 6 hits

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR032867, DYW_dom
IPR002885, Pentatricopeptide_repeat
IPR011990, TPR-like_helical_dom_sf

Pfam protein domain database

More...Pfami		View protein in Pfam
PF14432, DYW_deaminase, 1 hit
PF01535, PPR, 6 hits
PF13041, PPR_2, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR00756, PPR, 3 hits

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS51375, PPR, 11 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

A0A287X9V0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
ALAAKLGLPG DPFVGNSLVS MYGRCGRVED AEKVFGGIPD AARNIVSWNA 
        60         70         80         90        100
LMAALSGDPR RGLELFRDCL VAVGGMVDEA TLVTVLPMCA ALGWSETGRA 
       110        120        130        140        150
VHGLAAKSGW DAPARVGNAL VDMYAKCGEL ADAERAFPEA PSVVSWNVML 
       160        170        180        190        200
GAYTRNREAG AAFGLLRDMQ IKEHGSVPAD EITVLSVLPA CSGPTELSRL 
       210        220        230        240        250
RELHAFTVRR GLDAASDKVP NALVAAYGRC GRLLHADRVF TDIRRKTVSS 
       260        270        280        290        300
WNTLISAHAQ QNTAAAIELF IQMTNACGLK PDGFSIGSLL MACADPKHLL 
       310        320        330        340        350
HVKATHGFIL RNGLERDTVI RASLLSAYIR CSRTEYLARV LFDAMEEKGE 
       360        370        380        390        400
VLWIAMISGY SQNGLPGESL QLFREMQSVE GHCSSVISAT SALMACSELS 
       410        420        430        440        450
SVRLGKEMHC FALKADLCDD PFLSSSLIDM YSKCGFVEDA RTFFDRLKAR 
       460        470        480        490        500
DAKVSWTAMI TGYAVNGLGR EAVELYGKMR REGMEPDEFT YLGLLMACGH 
       510        520        530        540        550
AGMLEEGLRF FDEMRNHHHK IEVKLEHYSC VIGMLSRAGR FADAVALMAE 
       560        570        580        590        600
MPQEPDAKIL SSVLSACHIH GEAELGSDVA ERLLELEPDK AEHYVLASNM 
       610        620        630        640        650
YAGSRRWDDM RKVRKMLRDA GIAKEPGCSW IDVAGKVYSF VAGENPHPEM 
       660        670        680        690        700
EQVRGMWRSL EERIREIGYV PDTTVVLHEL EEEEKVEALR WHSEKQAVTF 
       710        720        730        740        750
GLLRTATPAT VRVFKNIRMC KDCHNAARLI SKDQATKKIL YRGRCVRGLY 

PLLPQGR
Length:757
Mass (Da):83,312
Last modified:November 22, 2017 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iCB54B63EC0F4751C
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
M0XY61M0XY61_HORVV
DYW_deaminase domain-containing pro...
851Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A287X9Y8A0A287X9Y8_HORVV
Integrase catalytic domain-containi...
258Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		HORVU7Hr1G090460.2; HORVU7Hr1G090460.2; HORVU7Hr1G090460

Gramene; a comparative resource for plants

More...Gramenei		HORVU7Hr1G090460.2; HORVU7Hr1G090460.2; HORVU7Hr1G090460

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

EnsemblPlantsiHORVU7Hr1G090460.2; HORVU7Hr1G090460.2; HORVU7Hr1G090460
GrameneiHORVU7Hr1G090460.2; HORVU7Hr1G090460.2; HORVU7Hr1G090460

Phylogenomic databases

OMAiKEVHSFA

Gene expression databases

ExpressionAtlasiA0A287X9V0, baseline and differential

Family and domain databases

Gene3Di1.25.40.10, 6 hits
InterProiView protein in InterPro
IPR032867, DYW_dom
IPR002885, Pentatricopeptide_repeat
IPR011990, TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF14432, DYW_deaminase, 1 hit
PF01535, PPR, 6 hits
PF13041, PPR_2, 1 hit
TIGRFAMsiTIGR00756, PPR, 3 hits
PROSITEiView protein in PROSITE
PS51375, PPR, 11 hits

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A287X9V0_HORVV
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A287X9V0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 22, 2017
Last sequence update: November 22, 2017
Last modified: August 12, 2020
This is version 13 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteomeImported
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