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Protein
Submitted name:

Uncharacterized protein

Gene
N/A
Organism
Hordeum vulgare subsp. vulgare (Domesticated barley)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi54 – 99HMG boxPROSITE-ProRule annotationAdd BLAST46

GO - Molecular functioni

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
OrganismiHordeum vulgare subsp. vulgare (Domesticated barley)Imported
Taxonomic identifieri112509 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladePooideaeTriticodaeTriticeaeHordeinaeHordeum
Proteomesi
  • UP000011116 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini54 – 99HMG boxInterPro annotationAdd BLAST46

Family and domain databases

Gene3Di1.10.30.10, 1 hit
InterProiView protein in InterPro
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
PfamiView protein in Pfam
PF00505 HMG_box, 1 hit
SMARTiView protein in SMART
SM00398 HMG, 1 hit
SUPFAMiSSF47095 SSF47095, 1 hit
PROSITEiView protein in PROSITE
PS50118 HMG_BOX_2, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 6 potential isoforms that are computationally mapped.iShow all

A0A287U356-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGSKSTKAIL YNYSEEPALT TLAPTMPVNN TGSKGGHRRR QRRKKLSTTD
60 70 80 90 100
PRHPKPNRSG YNFFFQDQHR KLKPEYPSQD RLISKMIGER WNNLSPEDKA
110 120 130 140 150
VRKKTSIKIS ALRIISYFVM RYVPSVIFNR CTKKEVYRTR RDTSLSWLLI

EKN
Length:153
Mass (Da):17,978
Last modified:November 22, 2017 - v1
Checksum:iB490122F86BB6960
GO

Computationally mapped potential isoform sequencesi

There are 6 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A287U3X7A0A287U3X7_HORVV
Uncharacterized protein
460Annotation score:
F2CVP8F2CVP8_HORVV
Predicted protein
451Annotation score:
A0A287U329A0A287U329_HORVV
Uncharacterized protein
377Annotation score:
A0A287U361A0A287U361_HORVV
Uncharacterized protein
324Annotation score:
M0W3D6M0W3D6_HORVV
Uncharacterized protein
239Annotation score:
A0A287U3X3A0A287U3X3_HORVV
Uncharacterized protein
86Annotation score:

Genome annotation databases

EnsemblPlantsiHORVU6Hr1G046980.3; HORVU6Hr1G046980.3; HORVU6Hr1G046980
GrameneiHORVU6Hr1G046980.3; HORVU6Hr1G046980.3; HORVU6Hr1G046980

Cross-referencesi

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiHORVU6Hr1G046980.3; HORVU6Hr1G046980.3; HORVU6Hr1G046980
GrameneiHORVU6Hr1G046980.3; HORVU6Hr1G046980.3; HORVU6Hr1G046980

Family and domain databases

Gene3Di1.10.30.10, 1 hit
InterProiView protein in InterPro
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
PfamiView protein in Pfam
PF00505 HMG_box, 1 hit
SMARTiView protein in SMART
SM00398 HMG, 1 hit
SUPFAMiSSF47095 SSF47095, 1 hit
PROSITEiView protein in PROSITE
PS50118 HMG_BOX_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A287U356_HORVV
AccessioniPrimary (citable) accession number: A0A287U356
Entry historyiIntegrated into UniProtKB/TrEMBL: November 22, 2017
Last sequence update: November 22, 2017
Last modified: January 31, 2018
This is version 3 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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