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Protein
Submitted name:

Uncharacterized protein

Gene

4525082

Organism
Hordeum vulgare subsp. vulgare (Domesticated barley)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionInitiation factorPROSITE-ProRule annotation
Biological processProtein biosynthesis

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Uncharacterized proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:4525082Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHordeum vulgare subsp. vulgare (Domesticated barley)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri112509 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladePooideaeTriticodaeTriticeaeHordeinaeHordeum
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000011116 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini8 – 83S1-likeInterPro annotationAdd BLAST76

Family and domain databases

Conserved Domains Database

More...
CDDi
cd04451 S1_IF1, 1 hit

HAMAP database of protein families

More...
HAMAPi
MF_00075 IF_1, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR012340 NA-bd_OB-fold
IPR006196 RNA-binding_domain_S1_IF1
IPR022967 S1_dom
IPR004368 TIF_IF1

The PANTHER Classification System

More...
PANTHERi
PTHR33370 PTHR33370, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01176 eIF-1a, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00316 S1, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50249 SSF50249, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR00008 infA, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50832 S1_IF1_TYPE, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 10 potential isoforms that are computationally mapped.Show allAlign All

A0A287TY42-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTEKKNRREK KNPREAKVTF EGLVTEALPN GMFRVRLEND TIILGYISGK
60 70 80 90 100
IRSSSIRILM GDRVKIEVSR YDSSKGRIIY RLPHKDSKRI EDSKDSEDLK

DSVDELE
Length:107
Mass (Da):12,427
Last modified:November 22, 2017 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iCFBC19823E03ABAD
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 10 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
S4Z1A4S4Z1A4_HORVV
DNA-directed RNA polymerase subunit...
rpoA 4525081, 4525082
339Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
S4Z0I7S4Z0I7_HORVV
30S ribosomal protein S11, chloropl...
rps11 4525082
143Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A287EA09A0A287EA09_HORVV
Uncharacterized protein
4525082
448Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A287RJG2A0A287RJG2_HORVV
Uncharacterized protein
4525082
261Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A287U4P7A0A287U4P7_HORVV
Uncharacterized protein
4525082
257Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A287E9B8A0A287E9B8_HORVV
Uncharacterized protein
4525082
261Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A287RJV7A0A287RJV7_HORVV
Uncharacterized protein
4525082
257Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A287RJN9A0A287RJN9_HORVV
Uncharacterized protein
4525082
339Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A287RJL6A0A287RJL6_HORVV
Uncharacterized protein
4525082
355Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A287EBF0A0A287EBF0_HORVV
Uncharacterized protein
4525082
233Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
HORVU0Hr1G026200.1; HORVU0Hr1G026200.1; HORVU0Hr1G026200
HORVU0Hr1G026270.1; HORVU0Hr1G026270.1; HORVU0Hr1G026270
HORVU0Hr1G026810.1; HORVU0Hr1G026810.1; HORVU0Hr1G026810
HORVU0Hr1G029960.6; HORVU0Hr1G029960.6; HORVU0Hr1G029960
HORVU0Hr1G032930.1; HORVU0Hr1G032930.1; HORVU0Hr1G032930
HORVU0Hr1G033440.1; HORVU0Hr1G033440.1; HORVU0Hr1G033440
HORVU0Hr1G033710.1; HORVU0Hr1G033710.1; HORVU0Hr1G033710
HORVU0Hr1G036980.1; HORVU0Hr1G036980.1; HORVU0Hr1G036980
HORVU0Hr1G037950.1; HORVU0Hr1G037950.1; HORVU0Hr1G037950
HORVU5Hr1G064730.1; HORVU5Hr1G064730.1; HORVU5Hr1G064730
HORVU6Hr1G037250.1; HORVU6Hr1G037250.1; HORVU6Hr1G037250
HORVU6Hr1G049440.6; HORVU6Hr1G049440.6; HORVU6Hr1G049440

Gramene; a comparative resource for plants

More...
Gramenei
HORVU0Hr1G026200.1; HORVU0Hr1G026200.1; HORVU0Hr1G026200
HORVU0Hr1G026270.1; HORVU0Hr1G026270.1; HORVU0Hr1G026270
HORVU0Hr1G026810.1; HORVU0Hr1G026810.1; HORVU0Hr1G026810
HORVU0Hr1G029960.6; HORVU0Hr1G029960.6; HORVU0Hr1G029960
HORVU0Hr1G032930.1; HORVU0Hr1G032930.1; HORVU0Hr1G032930
HORVU0Hr1G033440.1; HORVU0Hr1G033440.1; HORVU0Hr1G033440
HORVU0Hr1G033710.1; HORVU0Hr1G033710.1; HORVU0Hr1G033710
HORVU0Hr1G036980.1; HORVU0Hr1G036980.1; HORVU0Hr1G036980
HORVU0Hr1G037950.1; HORVU0Hr1G037950.1; HORVU0Hr1G037950
HORVU5Hr1G064730.1; HORVU5Hr1G064730.1; HORVU5Hr1G064730
HORVU6Hr1G037250.1; HORVU6Hr1G037250.1; HORVU6Hr1G037250
HORVU6Hr1G049440.6; HORVU6Hr1G049440.6; HORVU6Hr1G049440

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiHORVU0Hr1G026200.1; HORVU0Hr1G026200.1; HORVU0Hr1G026200
HORVU0Hr1G026270.1; HORVU0Hr1G026270.1; HORVU0Hr1G026270
HORVU0Hr1G026810.1; HORVU0Hr1G026810.1; HORVU0Hr1G026810
HORVU0Hr1G029960.6; HORVU0Hr1G029960.6; HORVU0Hr1G029960
HORVU0Hr1G032930.1; HORVU0Hr1G032930.1; HORVU0Hr1G032930
HORVU0Hr1G033440.1; HORVU0Hr1G033440.1; HORVU0Hr1G033440
HORVU0Hr1G033710.1; HORVU0Hr1G033710.1; HORVU0Hr1G033710
HORVU0Hr1G036980.1; HORVU0Hr1G036980.1; HORVU0Hr1G036980
HORVU0Hr1G037950.1; HORVU0Hr1G037950.1; HORVU0Hr1G037950
HORVU5Hr1G064730.1; HORVU5Hr1G064730.1; HORVU5Hr1G064730
HORVU6Hr1G037250.1; HORVU6Hr1G037250.1; HORVU6Hr1G037250
HORVU6Hr1G049440.6; HORVU6Hr1G049440.6; HORVU6Hr1G049440
GrameneiHORVU0Hr1G026200.1; HORVU0Hr1G026200.1; HORVU0Hr1G026200
HORVU0Hr1G026270.1; HORVU0Hr1G026270.1; HORVU0Hr1G026270
HORVU0Hr1G026810.1; HORVU0Hr1G026810.1; HORVU0Hr1G026810
HORVU0Hr1G029960.6; HORVU0Hr1G029960.6; HORVU0Hr1G029960
HORVU0Hr1G032930.1; HORVU0Hr1G032930.1; HORVU0Hr1G032930
HORVU0Hr1G033440.1; HORVU0Hr1G033440.1; HORVU0Hr1G033440
HORVU0Hr1G033710.1; HORVU0Hr1G033710.1; HORVU0Hr1G033710
HORVU0Hr1G036980.1; HORVU0Hr1G036980.1; HORVU0Hr1G036980
HORVU0Hr1G037950.1; HORVU0Hr1G037950.1; HORVU0Hr1G037950
HORVU5Hr1G064730.1; HORVU5Hr1G064730.1; HORVU5Hr1G064730
HORVU6Hr1G037250.1; HORVU6Hr1G037250.1; HORVU6Hr1G037250
HORVU6Hr1G049440.6; HORVU6Hr1G049440.6; HORVU6Hr1G049440

Family and domain databases

CDDicd04451 S1_IF1, 1 hit
HAMAPiMF_00075 IF_1, 1 hit
InterProiView protein in InterPro
IPR012340 NA-bd_OB-fold
IPR006196 RNA-binding_domain_S1_IF1
IPR022967 S1_dom
IPR004368 TIF_IF1
PANTHERiPTHR33370 PTHR33370, 1 hit
PfamiView protein in Pfam
PF01176 eIF-1a, 1 hit
SMARTiView protein in SMART
SM00316 S1, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR00008 infA, 1 hit
PROSITEiView protein in PROSITE
PS50832 S1_IF1_TYPE, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A287TY42_HORVV
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A287TY42
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 22, 2017
Last sequence update: November 22, 2017
Last modified: December 5, 2018
This is version 6 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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