UniProtKB - A0A287A2Y7 (A0A287A2Y7_PIG)
Protein
Submitted name:
Trinucleotide repeat containing adaptor 6A
Gene
TNRC6A
Organism
Sus scrofa (Pig)
Status
Functioni
GO - Molecular functioni
- nucleic acid binding Source: InterPro
GO - Biological processi
- cellular response to starvation Source: Ensembl
- miRNA mediated inhibition of translation Source: Ensembl
Keywordsi
Biological process | RNA-mediated gene silencingARBA annotation |
Names & Taxonomyi
Protein namesi | Submitted name: Trinucleotide repeat containing adaptor 6AImported |
Gene namesi | Name:TNRC6AImported |
Organismi | Sus scrofa (Pig)Imported |
Taxonomic identifieri | 9823 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Laurasiatheria › Artiodactyla › Suina › Suidae › Sus |
Proteomesi |
|
Organism-specific databases
VGNCi | VGNC:94292, TNRC6A |
Subcellular locationi
Golgi apparatus
- Golgi apparatus Source: Ensembl
Nucleus
- nucleoplasm Source: Ensembl
Other locations
- P-body Source: Ensembl
- RISC complex Source: Ensembl
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 1100 – 1228 | Ago_hookInterPro annotationAdd BLAST | 129 | |
Domaini | 1307 – 1508 | M_domainInterPro annotationAdd BLAST | 202 | |
Domaini | 1532 – 1805 | TNRC6-PABC_bdgInterPro annotationAdd BLAST | 274 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 180 | DisorderedSequence analysisAdd BLAST | 180 | |
Regioni | 195 – 322 | DisorderedSequence analysisAdd BLAST | 128 | |
Regioni | 463 – 482 | DisorderedSequence analysisAdd BLAST | 20 | |
Regioni | 562 – 726 | DisorderedSequence analysisAdd BLAST | 165 | |
Regioni | 745 – 784 | DisorderedSequence analysisAdd BLAST | 40 | |
Regioni | 796 – 1040 | DisorderedSequence analysisAdd BLAST | 245 | |
Regioni | 1052 – 1168 | DisorderedSequence analysisAdd BLAST | 117 | |
Regioni | 1185 – 1224 | DisorderedSequence analysisAdd BLAST | 40 | |
Regioni | 1277 – 1300 | DisorderedSequence analysisAdd BLAST | 24 | |
Regioni | 1350 – 1397 | DisorderedSequence analysisAdd BLAST | 48 | |
Regioni | 1451 – 1483 | DisorderedSequence analysisAdd BLAST | 33 | |
Regioni | 1604 – 1662 | DisorderedSequence analysisAdd BLAST | 59 | |
Regioni | 1751 – 1776 | DisorderedSequence analysisAdd BLAST | 26 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 23 – 79 | PolyampholyteSequence analysisAdd BLAST | 57 | |
Compositional biasi | 83 – 156 | PolarSequence analysisAdd BLAST | 74 | |
Compositional biasi | 195 – 258 | PolarSequence analysisAdd BLAST | 64 | |
Compositional biasi | 283 – 322 | PolarSequence analysisAdd BLAST | 40 | |
Compositional biasi | 562 – 703 | PolarSequence analysisAdd BLAST | 142 | |
Compositional biasi | 704 – 726 | PolyampholyteSequence analysisAdd BLAST | 23 | |
Compositional biasi | 745 – 764 | PolarSequence analysisAdd BLAST | 20 | |
Compositional biasi | 828 – 977 | PolarSequence analysisAdd BLAST | 150 | |
Compositional biasi | 1009 – 1031 | PolyampholyteSequence analysisAdd BLAST | 23 | |
Compositional biasi | 1052 – 1107 | PolarSequence analysisAdd BLAST | 56 | |
Compositional biasi | 1123 – 1146 | PolarSequence analysisAdd BLAST | 24 | |
Compositional biasi | 1185 – 1199 | PolarSequence analysisAdd BLAST | 15 | |
Compositional biasi | 1350 – 1392 | PolarSequence analysisAdd BLAST | 43 | |
Compositional biasi | 1753 – 1767 | Pro-richSequence analysisAdd BLAST | 15 |
Sequence similaritiesi
Belongs to the GW182 family.ARBA annotation
Phylogenomic databases
GeneTreei | ENSGT00940000158180 |
Family and domain databases
CDDi | cd12711, RRM_TNRC6A, 1 hit |
Gene3Di | 3.30.70.330, 1 hit |
InterProi | View protein in InterPro IPR019486, Argonaute_hook_dom IPR026805, GW182_M_dom IPR012677, Nucleotide-bd_a/b_plait_sf IPR035979, RBD_domain_sf IPR032226, TNRC6_PABC-bd IPR033501, TNRC6A IPR034924, TNRC6A_RRM |
PANTHERi | PTHR13020:SF28, PTHR13020:SF28, 1 hit |
Pfami | View protein in Pfam PF10427, Ago_hook, 1 hit PF12938, M_domain, 1 hit PF16608, TNRC6-PABC_bdg, 1 hit |
SUPFAMi | SSF54928, SSF54928, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 6 potential isoforms that are computationally mapped.Show allAlign All
A0A287A2Y7-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MQLVAEPGLE ARCPGSQDIP LPEEWNRELE AKATKDVERN LSRDLVQEEE
60 70 80 90 100
QLMEEKKKKK DDKKKKEAAQ KKATEQKIKV PEQIKPSVSQ PQPANSNNGT
110 120 130 140 150
STATSTNNNA KRATANNQQQ QQQQQQPQQP QQPQQPPQQQ QQQQQQQQQQ
160 170 180 190 200
QQPPQALPRY PREVPPRFRH QEHKQLLKRG QHFPVIAANL GSAVKVLSSQ
210 220 230 240 250
SESSALTNQQ PQSNGEVQNS KAQSDINHST SGSHYENLQR GPVSSTSDSS
260 270 280 290 300
TNCKNAVVND SPEKEAWPSV PGSDPELASE CMDADSASSS ESERNITIMA
310 320 330 340 350
SGSTGGEKDG LRNSTGLGSQ NKFVVGSSSN NVGHGSSTGP WGFSHGAIIS
360 370 380 390 400
TCQVSVDAPE SKSESSNNRM NAWGTVSSSS NGGLNPSTLN SASNHGAWPV
410 420 430 440 450
LENNGLALKG PVGSGSSGIN IQCSTLGQMP NNQSINSKVG GSSTHGTWGS
460 470 480 490 500
LQETCESEVS GTQKVSFSGQ PQNITTEMTG PNNTTNFMTS SLPNSGSVQN
510 520 530 540 550
NELPSNTGAW RVSTMNHPQI QAPSVMNGTS LSHLSNGESK SGGSYGTTWG
560 570 580 590 600
AYGSNYSGDK CSSPNGQANG DTVNATLMQP GINGPMGTNF QVNTNKGGGV
610 620 630 640 650
WESGTANSQS ASWGNGNGAN SGGSRRGWGA PAQNTGTNIP SVEWNKLPSN
660 670 680 690 700
QHSNDSANGN GKKFTNGWKS TEEEDQGSAT SQTNEQNSVW AKTGGTVESE
710 720 730 740 750
GSTESTGRLE EKGTGENQSR DRRKIDQHTL LQSIVNRTDL DPRVLSNSGW
760 770 780 790 800
GQTPIKQNTA WDTETSPRGE RKTDNGTEAW GSSATQTFNS GACIEKTSPN
810 820 830 840 850
SNDTSSVSGW GDPKPALRWG DSKGSNCQGG WEDDSAATGM VKSNQWGNCK
860 870 880 890 900
EEKSAWNDSQ KNKQGWGDGQ KSNQGWSVSA GDNWGETSRS NHWGEANKKS
910 920 930 940 950
SSGGSDSDRS VSGWNELGKT SSFTWGNNIN PNNSSGWDES SKSNPSQGWG
960 970 980 990 1000
DPPKSNQSLG WGDSSKPVSS PDWNKQQDIV GSWGILPATG KPPGTGWLGG
1010 1020 1030 1040 1050
PIPAPAKEEE PTGWEEPSPE SIRRKMEIDD GTSAWGDPSK YNYKNVNMWN
1060 1070 1080 1090 1100
KNVPNGSSRS DQQAQVHQLL PSASAISNKE ASNGSGWGEP WGETSTPATT
1110 1120 1130 1140 1150
VDNGTSAWGK PIDSGPSWGE PIAAASSAST WGSSSVGPQA LSKSGPKSMQ
1160 1170 1180 1190 1200
DGWCGDDMPL PGNRPTGWEE EEDVEIGMWN SNSSQELNSS LNWPPYTKKM
1210 1220 1230 1240 1250
SSKGLSGKKR RRERGMMKGG NKQEEAWINP FVKQFSNISF SRDSPEENVQ
1260 1270 1280 1290 1300
SNKMDLSGGM LQDKRMEIDK HSLNIGDYNR TVGKGPGSRP QISKESSMER
1310 1320 1330 1340 1350
SPYFDKDGIV ADESQNMQFM SSQSMKLPPS NSALPNQALG SIAGLGMQNL
1360 1370 1380 1390 1400
NSVRQNGNPS MFGVGNTAAQ PRGMQQPPAQ PLSSSQPNLR AQVPPPLLSP
1410 1420 1430 1440 1450
QVPVSLLKYA PNNGGLNPLF GPQQVAMLNQ LSQLNQLSQI SQLQRLLAQQ
1460 1470 1480 1490 1500
QRAQNQRSVP SGNRQQQDQQ GRPLSVQQQM MQQSRQLDPN LLVKQQTPPS
1510 1520 1530 1540 1550
QQQSLHQPAM KSFLENVMPH TTPELQKGPS PINAFSNFPI GLNSNLNVNM
1560 1570 1580 1590 1600
DMNSIKEPQS RLRKWTTVDS ISVNTSLDQN SSKHGAISSG FRLEESPFVP
1610 1620 1630 1640 1650
YDFMNSSTSP ASPPGSIGDG WPRAKSPNGS SSVNWPPEFR PGEPWKGYPN
1660 1670 1680 1690 1700
IDPETDPYVT PGSVINNLSI NTVREVDHLR DRNSGSSSSL NTTLPSTSAW
1710 1720 1730 1740 1750
SSIRASNYNV PLSSTAQSTS ARNSDSKLTW SPGSVTNTSL AHELWKVPLP
1760 1770 1780 1790 1800
PKNITAPSRP PPGLTGQKPP LSTWDNSPLR VGGGWGNSDA RYTPGSSWGE
1810 1820 1830 1840 1850
SSSGRITNWL VLKNLTPQID GSTLRTLCMQ HGPLITFHLN LPHGNALVRY
1860 1870 1880 1890 1900
SSKEEVVKAQ KSLHMCVLGN TTILAEFASE EEISRFFAQS QSLTPSPSWQ
1910 1920 1930 1940 1950
SLGSSQSRLG SLDCSHSFSS RTDLNHWNGA GLSGTNCGDL HGTSLWGTPH
1960 1970 1980
YSTSLWGPPS SSDPRGISSP SPINAFLSVD HLGGGGESM
Computationally mapped potential isoform sequencesi
There are 6 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketA0A287BE94 | A0A287BE94_PIG | Trinucleotide repeat containing ada... | TNRC6A | 1,940 | Annotation score: | ||
A0A287AJT5 | A0A287AJT5_PIG | Trinucleotide repeat containing ada... | TNRC6A | 1,844 | Annotation score: | ||
A0A287AKZ0 | A0A287AKZ0_PIG | Trinucleotide repeat containing ada... | TNRC6A | 1,904 | Annotation score: | ||
A0A287AXJ4 | A0A287AXJ4_PIG | Trinucleotide repeat containing ada... | TNRC6A | 1,856 | Annotation score: | ||
A0A287BNE0 | A0A287BNE0_PIG | Trinucleotide repeat containing ada... | TNRC6A | 1,798 | Annotation score: | ||
A0A287AVJ8 | A0A287AVJ8_PIG | Trinucleotide repeat containing ada... | TNRC6A | 1,823 | Annotation score: |
Genome annotation databases
Ensembli | ENSSSCT00000042519; ENSSSCP00000038310; ENSSSCG00000038870 |
Similar proteinsi
Cross-referencesi
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Genome annotation databases
Ensembli | ENSSSCT00000042519; ENSSSCP00000038310; ENSSSCG00000038870 |
Organism-specific databases
VGNCi | VGNC:94292, TNRC6A |
Phylogenomic databases
GeneTreei | ENSGT00940000158180 |
Gene expression databases
ExpressionAtlasi | A0A287A2Y7, baseline and differential |
Family and domain databases
CDDi | cd12711, RRM_TNRC6A, 1 hit |
Gene3Di | 3.30.70.330, 1 hit |
InterProi | View protein in InterPro IPR019486, Argonaute_hook_dom IPR026805, GW182_M_dom IPR012677, Nucleotide-bd_a/b_plait_sf IPR035979, RBD_domain_sf IPR032226, TNRC6_PABC-bd IPR033501, TNRC6A IPR034924, TNRC6A_RRM |
PANTHERi | PTHR13020:SF28, PTHR13020:SF28, 1 hit |
Pfami | View protein in Pfam PF10427, Ago_hook, 1 hit PF12938, M_domain, 1 hit PF16608, TNRC6-PABC_bdg, 1 hit |
SUPFAMi | SSF54928, SSF54928, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | A0A287A2Y7_PIG | |
Accessioni | A0A287A2Y7Primary (citable) accession number: A0A287A2Y7 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | November 22, 2017 |
Last sequence update: | December 11, 2019 | |
Last modified: | December 2, 2020 | |
This is version 19 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |