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Protein
Submitted name:

RALY heterogeneous nuclear ribonucleoprotein

Gene

RALY

Organism
Sus scrofa (Pig)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RALY heterogeneous nuclear ribonucleoproteinImported
Gene namesi
Name:RALYImported
OrganismiSus scrofa (Pig)Imported
Taxonomic identifieri9823 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus
Proteomesi
  • UP000008227 Componenti: Chromosome 17

PTM / Processingi

Proteomic databases

PRIDEiA0A286ZYT0

Expressioni

Gene expression databases

ExpressionAtlasiA0A286ZYT0 baseline and differential

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini21 – 92RRMInterPro annotationAdd BLAST72

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili171 – 198Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

GeneTreeiENSGT00390000006718

Family and domain databases

CDDicd12604 RRM_RALY, 1 hit
Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR017347 hnRNP_C
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR034502 RALY_RRM
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 1 hit
PIRSFiPIRSF037992 hnRNP-C_Raly, 1 hit
SMARTiView protein in SMART
SM00360 RRM, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

A0A286ZYT0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSLKIQTSNV TNKNDPKSIN SRVFIGNLNT AVVKKSDVET IFSKYGRVAG
60 70 80 90 100
CSVHKGYAFV QYANERHARA AVLGENGRVL AGQTLDINMA GEPKPNRPKG
110 120 130 140 150
LKRTASAIYR LFDYRGRLSP VPVPRAVPVK RPRVTVPLVR RVKTTIPVKL
160 170 180 190 200
FARSTAITTG SAKIKLKSSE LQAIKTELTQ IKSNIDALLG RLEQIAEEQK
210 220 230 240 250
ANPDGKKKGE GGSGGGSGSG SGGGGSGGGS SGGGSGAGSS SGGGSAGGGG
260 270 280 290 300
SGSSGGSSRP PAPQEDTASE AGTPQGEAQA RDDGDEEGLL THSEEELEHS
310
QDTDAEDGAL Q
Length:311
Mass (Da):31,937
Last modified:November 22, 2017 - v1
Checksum:i5F11BB6437A960F7
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F1S4Y9F1S4Y9_PIG
RALY heterogeneous nuclear ribonucl...
RALY
327Annotation score:
A0A287BLC1A0A287BLC1_PIG
Uncharacterized protein
RALY
289Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AEMK02000106 Genomic DNA No translation available.
RefSeqiXP_003134451.1, XM_003134403.4
XP_005672925.1, XM_005672868.2
UniGeneiSsc.30917

Genome annotation databases

EnsembliENSSSCT00000043976; ENSSSCP00000036779; ENSSSCG00000007275
ENSSSCT00000045140; ENSSSCP00000055454; ENSSSCG00000007275
ENSSSCT00000046368; ENSSSCP00000044472; ENSSSCG00000007275
GeneIDi100157085

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AEMK02000106 Genomic DNA No translation available.
RefSeqiXP_003134451.1, XM_003134403.4
XP_005672925.1, XM_005672868.2
UniGeneiSsc.30917

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiA0A286ZYT0

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSSSCT00000043976; ENSSSCP00000036779; ENSSSCG00000007275
ENSSSCT00000045140; ENSSSCP00000055454; ENSSSCG00000007275
ENSSSCT00000046368; ENSSSCP00000044472; ENSSSCG00000007275
GeneIDi100157085

Organism-specific databases

CTDi22913

Phylogenomic databases

GeneTreeiENSGT00390000006718

Gene expression databases

ExpressionAtlasiA0A286ZYT0 baseline and differential

Family and domain databases

CDDicd12604 RRM_RALY, 1 hit
Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR017347 hnRNP_C
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR034502 RALY_RRM
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 1 hit
PIRSFiPIRSF037992 hnRNP-C_Raly, 1 hit
SMARTiView protein in SMART
SM00360 RRM, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A286ZYT0_PIG
AccessioniPrimary (citable) accession number: A0A286ZYT0
Entry historyiIntegrated into UniProtKB/TrEMBL: November 22, 2017
Last sequence update: November 22, 2017
Last modified: November 7, 2018
This is version 7 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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