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Protein
Submitted name:

Nodulation protein D (Transcriptional regulator, LysR family)

Gene

SF83666_a44780

Organism
Sinorhizobium fredii CCBAU 83666
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi23 – 42H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Nodulation protein D (Transcriptional regulator, LysR family)Imported
Gene namesi
ORF Names:SF83666_a44780Imported
Encoded oniPlasmid psf83666aImported
OrganismiSinorhizobium fredii CCBAU 83666Imported
Taxonomic identifieri1128334 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
Proteomesi
  • UP000217168 Componenti: Plasmid psf83666a

Structurei

3D structure databases

SMRiA0A249Q7L6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 63HTH lysR-typeInterPro annotationAdd BLAST58

Sequence similaritiesi

Belongs to the LysR transcriptional regulatory family.SAAS annotation

Family and domain databases

CDDicd08462 PBP2_NodD, 1 hit
Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR037416 NodD_PBP2
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
PRINTSiPR00039 HTHLYSR
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

A0A249Q7L6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRFKGLDLNL LVALDALMTE RKLTAAARSI NLSQPAMSAA ITRLRTYFRD
60 70 80 90 100
ELFTMNGREL VPTPRAEALA PAVREALLHI HLSIISWDPF NPAQSDRSFR
110 120 130 140 150
IILSDFMTLM FFERVVVRVA REAPAVSFEL LPFSDEPDEL LRRGDVDFLI
160 170 180 190 200
LPEMFMSHTH PRAKLFDERF VCVSCPTNQK LPPQLSIDNY VSMGHVAAQF
210 220 230 240 250
GKQRPSVEEW LLREHGLRRR VEVAVPGFTM IPPFLSGTDR IATLPLRLAM
260 270 280 290 300
HFAKAIPLRI TELPQPIFPA FTEAVQWPAP HSSDPASLWM REIFLQEASR
310 320
VEFQSETSAH ALSSSQLPTC L
Length:321
Mass (Da):36,388
Last modified:December 20, 2017 - v1
Checksum:i2EF16B63A8E00284
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP023072 Genomic DNA Translation: ASY74066.1
RefSeqiWP_014857603.1, NZ_CP023072.1

Genome annotation databases

GeneIDi24960476

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP023072 Genomic DNA Translation: ASY74066.1
RefSeqiWP_014857603.1, NZ_CP023072.1

3D structure databases

SMRiA0A249Q7L6
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi24960476

Family and domain databases

CDDicd08462 PBP2_NodD, 1 hit
Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR037416 NodD_PBP2
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
PRINTSiPR00039 HTHLYSR
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A249Q7L6_RHIFR
AccessioniPrimary (citable) accession number: A0A249Q7L6
Entry historyiIntegrated into UniProtKB/TrEMBL: December 20, 2017
Last sequence update: December 20, 2017
Last modified: November 7, 2018
This is version 7 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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