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UniProtKB - A0A1Y1KW51 (A0A1Y1KW51_PHOPY)

Entry version 8 (07 Oct 2020)
Sequence version 1 (30 Aug 2017)
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Protein

ATP-binding domain-containing protein 4

Gene
N/A
Organism
Photinus pyralis (Common eastern firefly) (Lampyris pyralis)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section describes the metabolic pathway(s) associated with a protein.<p><a href='/help/pathway' target='_top'>More...</a></p>Pathwayi: peptidyl-diphthamide biosynthesis

This protein is involved in the pathway peptidyl-diphthamide biosynthesis, which is part of Protein modification.ARBA annotation
View all proteins of this organism that are known to be involved in the pathway peptidyl-diphthamide biosynthesis and in Protein modification.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

Enzyme and pathway databases

UniPathway: a resource for the exploration and annotation of metabolic pathways

More...UniPathwayi		UPA00559

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
ATP-binding domain-containing protein 4ARBA annotation (EC:6.3.1.14ARBA annotation)
Alternative name(s):
Diphthamide synthaseARBA annotation
Diphthamide synthetaseARBA annotation
Diphthine--ammonia ligaseARBA annotation
Protein DPH6 homologARBA annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPhotinus pyralis (Common eastern firefly) (Lampyris pyralis)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri7054 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Ecdysozoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Holometabola › Coleoptera › Polyphaga › Elateriformia › Elateroidea › Lampyridae › Lampyrinae › Photinus

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1 – 227Diphthami_syn_2InterPro annotationAdd BLAST227

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the Diphthine--ammonia ligase family.ARBA annotation

Family and domain databases

Conserved Domains Database

More...CDDi		cd01994, Alpha_ANH_like_IV, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		3.30.1330.40, 2 hits
3.40.50.620, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR002761, Diphthami_syn_dom
IPR030662, DPH6/MJ0570
IPR014729, Rossmann-like_a/b/a_fold
IPR035959, RutC-like_sf
IPR006175, YjgF/YER057c/UK114

The PANTHER Classification System

More...PANTHERi		PTHR12196, PTHR12196, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF01902, Diphthami_syn_2, 1 hit
PF01042, Ribonuc_L-PSP, 2 hits

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF55298, SSF55298, 2 hits

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR00290, MJ0570_dom, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

A0A1Y1KW51-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKVVGLISGG KDSCYNLMQC VAAGHEIVAL ANLMPQSKTE IDSYMYQSVG 
        60         70         80         90        100
HEAIDLIAEA MQLPLYRKEI TGDSKSVGIN YSYTSDDEVE DLFELLQNVK 
       110        120        130        140        150
DDMPIEGVSV GAILSDYQRN RVENVCSRLQ LTPLAYLWQR NQQELLCEMI 
       160        170        180        190        200
KCEVDAIVIK VAALGLEPSR HLGRSLRLLE PHLMAMHDKY GLNVCGEGGE 
       210        220        230        240        250
YETLVLDCPL FGSRIVIEAS EVILHSANPI APVGFLKLNK LKLEPKLPQL 
       260        270        280        290        300
NFYSRLKNVP LSDSDGYITD HGEEATEFVD DNTSSADETV AHTVTIKTVS 
       310        320        330        340        350
CCPELNAVSN DGWLWISGLC GNSASCEEAL KMALEKLKST LSTYGHTLED 
       360        370        380        390        400
VVSVSMLVSD MSKFVELNKL YVDVIKHVNP PTRACVEVPL PKNCPVILEV 
       410        420        430        440        450
VSWSLPDDAI ERDPPIERHT MHIQSISHWA PANIGPYSQA IRVGEFVYIA 
       460        470        480        490        500
GQIGLVPGSM QLVRGGVKSQ CQLAIRHVGR IISGIDSNTN LRDVVQAVCY 
       510        520        530        540        550
VTNIQVINNV RKLWEATTNN AIVNYVVVSG LPKNALVEWH VWVHRHNSSF 
       560        570        580        590        600
EYEETGKCVN DWSISIYRRW NYENNISAVV CHVDCPQDET DTVPIEVYQE 
       610        620        630        640        650
TFRYVIQKLQ LGHEGDSTSI CNLKIFYNVQ KAISLTDVID CINEFEESIT 
       660        670 
VIYLLVPVVG LYSEQTFLSI CGVRKQ
Length:676
Mass (Da):75,359
Last modified:August 30, 2017 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i7AB7166F53F55020
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
GEZM01073840 Transcribed RNA Translation: JAV64792.1
GEZM01073838 Transcribed RNA Translation: JAV64794.1
GEZM01073834 Transcribed RNA Translation: JAV64798.1
GEZM01073833 Transcribed RNA Translation: JAV64799.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GEZM01073840 Transcribed RNA Translation: JAV64792.1
GEZM01073838 Transcribed RNA Translation: JAV64794.1
GEZM01073834 Transcribed RNA Translation: JAV64798.1
GEZM01073833 Transcribed RNA Translation: JAV64799.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Enzyme and pathway databases

UniPathwayiUPA00559

Family and domain databases

CDDicd01994, Alpha_ANH_like_IV, 1 hit
Gene3Di3.30.1330.40, 2 hits
3.40.50.620, 1 hit
InterProiView protein in InterPro
IPR002761, Diphthami_syn_dom
IPR030662, DPH6/MJ0570
IPR014729, Rossmann-like_a/b/a_fold
IPR035959, RutC-like_sf
IPR006175, YjgF/YER057c/UK114
PANTHERiPTHR12196, PTHR12196, 1 hit
PfamiView protein in Pfam
PF01902, Diphthami_syn_2, 1 hit
PF01042, Ribonuc_L-PSP, 2 hits
SUPFAMiSSF55298, SSF55298, 2 hits
TIGRFAMsiTIGR00290, MJ0570_dom, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A1Y1KW51_PHOPY
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A1Y1KW51
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: August 30, 2017
Last sequence update: August 30, 2017
Last modified: October 7, 2020
This is version 8 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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