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Protein
Submitted name:

PDZ and LIM domain protein 1

Gene

pdlim1

Organism
Scleropages formosus (Asian bonytongue)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
PDZ and LIM domain protein 1Imported
Gene namesi
Name:pdlim1Imported
OrganismiScleropages formosus (Asian bonytongue)Imported
Taxonomic identifieri113540 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOsteoglossocephalaOsteoglossomorphaOsteoglossiformesOsteoglossidaeScleropages
Proteomesi
  • UP000192224 Componenti: Genome assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 84PDZInterPro annotationAdd BLAST84
Domaini251 – 310LIM zinc-bindingInterPro annotationAdd BLAST60

Keywords - Domaini

LIM domainPROSITE-ProRule annotationSAAS annotation

Family and domain databases

InterProiView protein in InterPro
IPR031847 DUF4749
IPR028537 PDLIM1
IPR001478 PDZ
IPR036034 PDZ_sf
IPR006643 Zasp-like_motif
IPR001781 Znf_LIM
PANTHERiPTHR24214:SF5 PTHR24214:SF5, 1 hit
PfamiView protein in Pfam
PF15936 DUF4749, 1 hit
PF00412 LIM, 1 hit
PF00595 PDZ, 1 hit
SMARTiView protein in SMART
SM00132 LIM, 1 hit
SM00228 PDZ, 1 hit
SM00735 ZM, 1 hit
SUPFAMiSSF50156 SSF50156, 1 hit
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 1 hit
PS50023 LIM_DOMAIN_2, 1 hit
PS50106 PDZ, 1 hit

Sequencei

Sequence statusi: Complete.

A0A1W4ZX45-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPLRVVMKGP GPWGFRLVGG KDFEQPLTIS RVNPDSKAAE ANLCVGDMIL
60 70 80 90 100
AIDGESTDGM THLAAQNKIK ACVDEMVLSI DRSESKMWSP LSSEEGKTNP
110 120 130 140 150
YKMNLASKPQ EVKHIGSAHN RSALPFSPAG SSPKVVTNQY NNPAGLYSSE
160 170 180 190 200
NIKSFNSAVD GARGSGTAEP GKNPDPAKPT SGRPPIAADS EVYKMLQENQ
210 220 230 240 250
ESKEPPRQSA SFNVLQEILE SGDSDRPSGF RSVKAPTAKI GSSVGNADKL
260 270 280 290 300
PICDKCGSGI IGLVVKLRDK VRHPECLVCT DCNVNLKQKG YFFVEDKIYC
310 320
EKHARDRMAP PEGYDVVTVY PK
Length:322
Mass (Da):34,796
Last modified:June 7, 2017 - v1
Checksum:i3F1AF1015BDA50C7
GO

Sequence databases

RefSeqiXP_018605076.1, XM_018749560.1

Genome annotation databases

GeneIDi108932876
KEGGisfm:108932876

Similar proteinsi

Cross-referencesi

Sequence databases

RefSeqiXP_018605076.1, XM_018749560.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi108932876
KEGGisfm:108932876

Organism-specific databases

CTDi9124

Family and domain databases

InterProiView protein in InterPro
IPR031847 DUF4749
IPR028537 PDLIM1
IPR001478 PDZ
IPR036034 PDZ_sf
IPR006643 Zasp-like_motif
IPR001781 Znf_LIM
PANTHERiPTHR24214:SF5 PTHR24214:SF5, 1 hit
PfamiView protein in Pfam
PF15936 DUF4749, 1 hit
PF00412 LIM, 1 hit
PF00595 PDZ, 1 hit
SMARTiView protein in SMART
SM00132 LIM, 1 hit
SM00228 PDZ, 1 hit
SM00735 ZM, 1 hit
SUPFAMiSSF50156 SSF50156, 1 hit
PROSITEiView protein in PROSITE
PS00478 LIM_DOMAIN_1, 1 hit
PS50023 LIM_DOMAIN_2, 1 hit
PS50106 PDZ, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A1W4ZX45_9TELE
AccessioniPrimary (citable) accession number: A0A1W4ZX45
Entry historyiIntegrated into UniProtKB/TrEMBL: June 7, 2017
Last sequence update: June 7, 2017
Last modified: February 28, 2018
This is version 7 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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