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Protein
Submitted name:

U5 small nuclear ribonucleoprotein 40 kDa protein

Gene

snrnp40

Organism
Scleropages formosus (Asian bonytongue)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Keywordsi

Molecular functionRibonucleoproteinImported, Viral nucleoproteinImported

Names & Taxonomyi

Protein namesi
Submitted name:
U5 small nuclear ribonucleoprotein 40 kDa proteinImported
Gene namesi
Name:snrnp40Imported
OrganismiScleropages formosus (Asian bonytongue)Imported
Taxonomic identifieri113540 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOsteoglossocephalaOsteoglossomorphaOsteoglossiformesOsteoglossidaeScleropages
Proteomesi
  • UP000192224 Componenti: Genome assembly

Subcellular locationi

    Keywords - Cellular componenti

    Virion

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Domaini55 – 350WD_REPEATS_REGIONInterPro annotationAdd BLAST296
    Repeati55 – 88WDPROSITE-ProRule annotationAdd BLAST34
    Repeati98 – 139WDPROSITE-ProRule annotationAdd BLAST42
    Repeati140 – 182WDPROSITE-ProRule annotationAdd BLAST43
    Repeati182 – 223WDPROSITE-ProRule annotationAdd BLAST42
    Repeati224 – 258WDPROSITE-ProRule annotationAdd BLAST35
    Repeati285 – 315WDPROSITE-ProRule annotationAdd BLAST31
    Repeati316 – 350WDPROSITE-ProRule annotationAdd BLAST35

    Keywords - Domaini

    WD repeatPROSITE-ProRule annotation

    Phylogenomic databases

    KOiK12857

    Family and domain databases

    Gene3Di2.130.10.10, 1 hit
    InterProiView protein in InterPro
    IPR020472 G-protein_beta_WD-40_rep
    IPR015943 WD40/YVTN_repeat-like_dom_sf
    IPR001680 WD40_repeat
    IPR019775 WD40_repeat_CS
    IPR017986 WD40_repeat_dom
    IPR036322 WD40_repeat_dom_sf
    PfamiView protein in Pfam
    PF00400 WD40, 7 hits
    PRINTSiPR00320 GPROTEINBRPT
    SMARTiView protein in SMART
    SM00320 WD40, 7 hits
    SUPFAMiSSF50978 SSF50978, 1 hit
    PROSITEiView protein in PROSITE
    PS00678 WD_REPEATS_1, 4 hits
    PS50082 WD_REPEATS_2, 7 hits
    PS50294 WD_REPEATS_REGION, 1 hit

    Sequencei

    Sequence statusi: Complete.

    A0A1W4ZI77-1 [UniParc]FASTAAdd to basket
    « Hide
            10         20         30         40         50
    MIEPKKRGAA EMAVVPAAQK RPRTELVAAA QSQQQQMVPM GPPRSSSLQA
    60 70 80 90 100
    PIMLLSGHEG EVYCCKFHPS GSALASAGYD RLILMWSVYG DCDNYATLKG
    110 120 130 140 150
    HSGAIMELHY NTDGSLLFSA STDKTVAVWD SETGERIKRL KGHTSFVNSC
    160 170 180 190 200
    YPARRGPQVV CTGSDDGTVK LWDIRKKASV HTFQNTYQVL AVTFNDTSDQ
    210 220 230 240 250
    IISGGIDNDI KVWDLRQNKL IYTMQGHGDS LTGLSLSSEG SYLLSNSMDN
    260 270 280 290 300
    TVRVWDVRPF APKERCVKIF QGNVHNFEKN LLRCSWSPDG SKIAAGSADR
    310 320 330 340 350
    FVYVWDTTSR RILYKLPGHA GSVNEVVFHP EEPIVLSASS DKRLYMGEIQ
    Length:350
    Mass (Da):38,687
    Last modified:June 7, 2017 - v1
    Checksum:iAEEA98411AC9666F
    GO

    Sequence databases

    RefSeqiXP_018603419.1, XM_018747903.1

    Genome annotation databases

    GeneIDi108931854
    KEGGisfm:108931854

    Similar proteinsi

    Cross-referencesi

    Sequence databases

    RefSeqiXP_018603419.1, XM_018747903.1

    3D structure databases

    ModBaseiSearch...
    MobiDBiSearch...

    Protocols and materials databases

    Structural Biology KnowledgebaseSearch...

    Genome annotation databases

    GeneIDi108931854
    KEGGisfm:108931854

    Organism-specific databases

    CTDi9410

    Phylogenomic databases

    KOiK12857

    Family and domain databases

    Gene3Di2.130.10.10, 1 hit
    InterProiView protein in InterPro
    IPR020472 G-protein_beta_WD-40_rep
    IPR015943 WD40/YVTN_repeat-like_dom_sf
    IPR001680 WD40_repeat
    IPR019775 WD40_repeat_CS
    IPR017986 WD40_repeat_dom
    IPR036322 WD40_repeat_dom_sf
    PfamiView protein in Pfam
    PF00400 WD40, 7 hits
    PRINTSiPR00320 GPROTEINBRPT
    SMARTiView protein in SMART
    SM00320 WD40, 7 hits
    SUPFAMiSSF50978 SSF50978, 1 hit
    PROSITEiView protein in PROSITE
    PS00678 WD_REPEATS_1, 4 hits
    PS50082 WD_REPEATS_2, 7 hits
    PS50294 WD_REPEATS_REGION, 1 hit
    ProtoNetiSearch...

    Entry informationi

    Entry nameiA0A1W4ZI77_9TELE
    AccessioniPrimary (citable) accession number: A0A1W4ZI77
    Entry historyiIntegrated into UniProtKB/TrEMBL: June 7, 2017
    Last sequence update: June 7, 2017
    Last modified: May 23, 2018
    This is version 8 of the entry and version 1 of the sequence. See complete history.
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported
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    Main funding by: National Institutes of Health

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