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Protein
Submitted name:

transmembrane and coiled-coil domain-containing protein 3 isoform X2

Gene

TMCO3

Organism
Alligator sinensis (Chinese alligator)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
transmembrane and coiled-coil domain-containing protein 3 isoform X2Imported
Gene namesi
Name:TMCO3Imported
OrganismiAlligator sinensis (Chinese alligator)Imported
Taxonomic identifieri38654 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaCrocodyliaAlligatoridaeAlligatorinaeAlligator
Proteomesi
  • UP000189705 Componenti: Genome assembly

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei306 – 333HelicalSequence analysisAdd BLAST28
Transmembranei345 – 364HelicalSequence analysisAdd BLAST20
Transmembranei448 – 472HelicalSequence analysisAdd BLAST25
Transmembranei493 – 513HelicalSequence analysisAdd BLAST21
Transmembranei549 – 569HelicalSequence analysisAdd BLAST21
Transmembranei574 – 597HelicalSequence analysisAdd BLAST24
Transmembranei636 – 655HelicalSequence analysisAdd BLAST20

Keywords - Cellular componenti

Membrane

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini341 – 654Na_H_ExchangerInterPro annotationAdd BLAST314

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili87 – 114Sequence analysisAdd BLAST28
Coiled coili158 – 185Sequence analysisAdd BLAST28
Coiled coili203 – 230Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Family and domain databases

Gene3Di1.20.1530.20, 2 hits
InterProiView protein in InterPro
IPR006153 Cation/H_exchanger
IPR038770 Na+/solute_symporter_sf
PfamiView protein in Pfam
PF00999 Na_H_Exchanger, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

A0A1U8DSQ6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MQRACSRRLW TIPSYVSPNH NKKWTMKAIV FISLWTLISL LCCQLANAAE
60 70 80 90 100
HDDVVKHAIK LHRGKGAAVT QRRQWVSENC RKLSGLLRQK NVVLNKLKNA
110 120 130 140 150
IKAVEKDLRL SDEEKLFRVH TFEIFQKELN ESENSVFQAI HGLQRALQGD
160 170 180 190 200
YKDVVNMKDS SRQRLEALRE AAIKEEMEYV ELLAAEKHQV EAIKNMQHQN
210 220 230 240 250
KSLSMLDEIL EDVRKAADRL EEEIEEHAFD DNKSVRGVNF EAVLRVEEDE
260 270 280 290 300
ADSKRNMSKR EVEDDLGLSM LIDSQNNQYI LTKPRDSTIP RADHHFIKDI
310 320 330 340 350
VTIGMLSLPC GWLCTMIGLP TMFGYIICGV LLGPSGLNSI KVWKISLQGP
360 370 380 390 400
CYMTVLMIAF GLLWGHLLQI RPTQSVFIST CLSLSSTPLV SRFLAGSARG
410 420 430 440 450
DKEGDIDYSS VLLGMLVMQD VQLGLFIAVM PTLIQAGAST YSSIVMEILR
460 470 480 490 500
ILILIGQILF SLAAVFLICL VIKTYLIGPY YRKLHAESKG NKEILILGIS
510 520 530 540 550
AFIFLMLTIT ELLDVSMELG CFLAGALISS QGHMVTEEIM SCIEPIRDFL
560 570 580 590 600
AIIFFASIGL HVFPTFVIYE LTILLFLTLS VVIMKFVLAV LVLSLILPKS
610 620 630 640 650
SQYIKWIVSA GLAQVSEFSF VLGSRARRAG IISREVYLLI LSVTTLSLLL
660 670
APALWRAGIM KCVPRPERRS ST
Length:672
Mass (Da):75,539
Last modified:May 10, 2017 - v1
Checksum:i7248D1C6E352C311
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1U8E1J6A0A1U8E1J6_ALLSI
transmembrane and coiled-coil domai...
TMCO3
703Annotation score:
A0A1U8DQA3A0A1U8DQA3_ALLSI
transmembrane and coiled-coil domai...
TMCO3
629Annotation score:

Sequence databases

RefSeqiXP_014383381.1, XM_014527895.1

Genome annotation databases

GeneIDi102372618

Similar proteinsi

Cross-referencesi

Sequence databases

RefSeqiXP_014383381.1, XM_014527895.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi102372618

Organism-specific databases

CTDi55002

Family and domain databases

Gene3Di1.20.1530.20, 2 hits
InterProiView protein in InterPro
IPR006153 Cation/H_exchanger
IPR038770 Na+/solute_symporter_sf
PfamiView protein in Pfam
PF00999 Na_H_Exchanger, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A1U8DSQ6_ALLSI
AccessioniPrimary (citable) accession number: A0A1U8DSQ6
Entry historyiIntegrated into UniProtKB/TrEMBL: May 10, 2017
Last sequence update: May 10, 2017
Last modified: May 23, 2018
This is version 6 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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