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Protein
Submitted name:

LOW QUALITY PROTEIN: volume-regulated anion channel subunit LRRC8B

Gene

LRRC8B

Organism
Alligator sinensis (Chinese alligator)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
LOW QUALITY PROTEIN: volume-regulated anion channel subunit LRRC8BImported
Gene namesi
Name:LRRC8BImported
OrganismiAlligator sinensis (Chinese alligator)Imported
Taxonomic identifieri38654 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaCrocodyliaAlligatoridaeAlligatorinaeAlligator
Proteomesi
  • UP000189705 Componenti: Genome assembly

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei27 – 47HelicalSequence analysisAdd BLAST21
Transmembranei120 – 142HelicalSequence analysisAdd BLAST23
Transmembranei260 – 283HelicalSequence analysisAdd BLAST24
Transmembranei303 – 336HelicalSequence analysisAdd BLAST34

Keywords - Cellular componenti

Membrane

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 332Pannexin_likeInterPro annotationAdd BLAST332

Keywords - Domaini

Leucine-rich repeatSAAS annotation, RepeatSAAS annotation, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

KOiK22038

Family and domain databases

Gene3Di3.80.10.10, 1 hit
InterProiView protein in InterPro
IPR001611 Leu-rich_rpt
IPR003591 Leu-rich_rpt_typical-subtyp
IPR026906 LRR_5
IPR032675 LRR_dom_sf
IPR038960 LRRC8
IPR021040 LRRC8_Pannexin-like
PANTHERiPTHR43945 PTHR43945, 1 hit
PfamiView protein in Pfam
PF13306 LRR_5, 1 hit
PF13855 LRR_8, 2 hits
PF12534 Pannexin_like, 1 hit
SMARTiView protein in SMART
SM00369 LRR_TYP, 8 hits
PROSITEiView protein in PROSITE
PS51450 LRR, 12 hits

Sequencei

Sequence statusi: Complete.

A0A1U8DQJ0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MITLTELKYL ADAQSSYHIL KPWWDVFWYY LTMIMLLVAV LAGALQLTQT
60 70 80 90 100
RLLCCLPCKL EFDNHCAVPW DLVKTNLNMS SSSAAQIIAP PKIQTDLHRQ
110 120 130 140 150
QYSYIDAVCY ERQLHWFAKF FPYVVLLHTF IFAACSNFWL YYPSTSSRLE
160 170 180 190 200
HFVAILHKCF DSPWTTRALS ETVAEQSARN LPLSKSKILL SSPGSSEARA
210 220 230 240 250
SRQSLPYTQP GLEPAGRESS SSVLDKKEGE QAKAIFEKVK KFRVHVEEKD
260 270 280 290 300
VIYTVYMKQI IVKVIVFVII IIYVPYYFTF ITLEIDCVIN IQAFTGYKRY
310 320 330 340 350
QCVYSLAEIF QVLASFYVVL VICYGLTCTY SLWWMLRSSL KQYSFEKLRE
360 370 380 390 400
KSNYSDIPDV KNDFAFILHL ADQYDPLYSQ RFSIFLSDLS ENKLKQINLN
410 420 430 440 450
NEWSAEKLKN KLIRNSQDKI ELQLFMLNGL PDSVFELTEI EVLSLELIPE
460 470 480 490 500
AKLPSAVSQL LSLKELNIYH STLTLDYPAL SFLEENLKTL RLKSSEIGRI
510 520 530 540 550
PLWVFHLKKL KELCLTGCFM LDHQNTIYSE GFQELKNLRS IHLRNNLSRI
560 570 580 590 600
PQVVTDLLPS LQNLSINNEG NKLIVLNNLK KLVNLRTLEL ICCDLERIPH
610 620 630 640 650
SIFTLNNLRE LDLRENNLRT VEEIISFQHL KNLSCLKLWH NTISYVPVQI
660 670 680 690 700
GALSNLEQLY LNYNNIKSVP LQLFLCRKLY YLDLSYNKLT SIPEEIKYLT
710 720 730 740 750
NLQYFALTKN HIEKLPDGLF QCKKLQYLLL GNNSLMSLSP LVGQLLNLIQ
760 770 780 790 800
LELVGNYLES LPAXXXXXXX XXXEECQFLK RSCLIVEESL LKTLPLCVRE

RLQMCVDK
Length:808
Mass (Da):93,656
Last modified:May 10, 2017 - v1
Checksum:iE0326CCE100041C0
GO

Sequence databases

RefSeqiXP_014379520.1, XM_014524034.1

Genome annotation databases

GeneIDi102378084
KEGGiasn:102378084

Similar proteinsi

Entry informationi

Entry nameiA0A1U8DQJ0_ALLSI
AccessioniPrimary (citable) accession number: A0A1U8DQJ0
Entry historyiIntegrated into UniProtKB/TrEMBL: May 10, 2017
Last sequence update: May 10, 2017
Last modified: June 20, 2018
This is version 9 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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