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Protein
Submitted name:

SLIT and NTRK-like protein 4 isoform X1

Gene

SLITRK4

Organism
Tarsius syrichta (Philippine tarsier)
Status
Unreviewed-Annotation score: -Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
SLIT and NTRK-like protein 4 isoform X1Imported
Gene namesi
Name:SLITRK4Imported
OrganismiTarsius syrichta (Philippine tarsier)Imported
Taxonomic identifieri1868482 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniTarsiiformesTarsiidaeCarlito
Proteomesi
  • UP000189704 Componenti: Genome assembly

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei649 – 675HelicalSequence analysisAdd BLAST27

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 50Sequence analysisAdd BLAST50
ChainiPRO_501051993651 – 869Sequence analysisAdd BLAST819

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini245 – 295LRRCTInterPro annotationAdd BLAST51
Domaini563 – 613LRRCTInterPro annotationAdd BLAST51

Keywords - Domaini

Leucine-rich repeatSAAS annotation, RepeatSAAS annotation, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Family and domain databases

Gene3Di3.80.10.10, 2 hits
InterProiView protein in InterPro
IPR000483 Cys-rich_flank_reg_C
IPR001611 Leu-rich_rpt
IPR003591 Leu-rich_rpt_typical-subtyp
IPR032675 LRR_dom_sf
PfamiView protein in Pfam
PF13855 LRR_8, 2 hits
SMARTiView protein in SMART
SM00369 LRR_TYP, 9 hits
SM00082 LRRCT, 2 hits
PROSITEiView protein in PROSITE
PS51450 LRR, 13 hits

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

A0A1U7SLK9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEASASAFED WGLSTDYLSL FRSIKLFADY KKMFLWLFLI LSALISSTNA
60 70 80 90 100
DSDISVEICN VCSCVSVENV LYVNCEKVSV YRPNQLKPPW SNFYHLNFQN
110 120 130 140 150
NFLNILYPNT FLNFSHAVSL HLGNNKLQNI EGGAFLGLSA LKQLHLNNNE
160 170 180 190 200
LKILRADTFL GIENLEYLQA DYNLIKYIER GAFNKLHKLK VLILNDNLIS
210 220 230 240 250
FLPDNIFRFA SLTHLDIRGN RIQKLPYIGV LEHIGRVVEL QLEDNPWNCS
260 270 280 290 300
CDLLPLKAWL ENMPYNIYIG EAICETPSDL YGRLLKETNK QELCPMGTGS
310 320 330 340 350
DFDVRILPPS QLENGYTTPN GHTTQTSLHR LVTKPPKTTN PSKISGIVAG
360 370 380 390 400
KALSNRNLSQ IVSYQTRVPP LTPCPAPCFC KTHPSDLGLS VNCQEKNIQS
410 420 430 440 450
MSELIPKPLN AKKLHVNGNS IKDVDMSDFT EFEGLDLLHL GSNQITVIKG
460 470 480 490 500
DVFHNLTNLR RLYLNGNQIE RLYPEIFSGL HNLQYLYLEY NLIKEILAGT
510 520 530 540 550
FDSMPNLQLL YLNNNLLKSL PVYIFSGAPL ARLNLRNNKF MYLPVSGVLD
560 570 580 590 600
QLQSLTQIDL EGNPWDCTCD LVALKLWLEK LNDGIVVKEL KCETPVQFAN
610 620 630 640 650
IELKSLKNEI LCPKLLNKPS APFTSPAPAI TFTTPLGPIR SPPGGPVPLS
660 670 680 690 700
ILILSILVVL ILTVFVAFCL LVFVLRRNKK PTVKHEGLGN PECGSMQLQL
710 720 730 740 750
RKHDHKTNKK DGPSTEAFIP QTIEQMSKSH TCGLKESETG FMFSDPPGQK
760 770 780 790 800
VTMRNAADKE KDLLHVDTRK RLSTIDELDE LFPSRDSNVF IQNFLESKKE
810 820 830 840 850
YNSIGVSGFE IRYPEKQQDK KNKKSLIGGN HSKIVVEQRK SEYFELKAKL
860
QSSPDYLQVL EEQTALNKI
Length:869
Mass (Da):98,147
Last modified:May 10, 2017 - v1
Checksum:i890E51D71A8F9817
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1U7ST91A0A1U7ST91_TARSY
SLIT and NTRK-like protein 4 isofor...
SLITRK4
837Annotation score:

Sequence databases

RefSeqiXP_008048749.1, XM_008050558.1

Genome annotation databases

GeneIDi103251952

Similar proteinsi

Cross-referencesi

Sequence databases

RefSeqiXP_008048749.1, XM_008050558.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi103251952

Organism-specific databases

CTDi139065

Family and domain databases

Gene3Di3.80.10.10, 2 hits
InterProiView protein in InterPro
IPR000483 Cys-rich_flank_reg_C
IPR001611 Leu-rich_rpt
IPR003591 Leu-rich_rpt_typical-subtyp
IPR032675 LRR_dom_sf
PfamiView protein in Pfam
PF13855 LRR_8, 2 hits
SMARTiView protein in SMART
SM00369 LRR_TYP, 9 hits
SM00082 LRRCT, 2 hits
PROSITEiView protein in PROSITE
PS51450 LRR, 13 hits
ProtoNetiSearch...

Entry informationi

Entry nameiA0A1U7SLK9_TARSY
AccessioniPrimary (citable) accession number: A0A1U7SLK9
Entry historyiIntegrated into UniProtKB/TrEMBL: May 10, 2017
Last sequence update: May 10, 2017
Last modified: February 28, 2018
This is version 7 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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