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Protein
Submitted name:

transcription factor SOX-17

Gene

Sox17

Organism
Mesocricetus auratus (Golden hamster)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi68 – 136HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
transcription factor SOX-17Imported
Gene namesi
Name:Sox17Imported
OrganismiMesocricetus auratus (Golden hamster)Imported
Taxonomic identifieri10036 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaCricetidaeCricetinaeMesocricetus
Proteomesi
  • UP000189706 Componenti: Genome assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini68 – 136HMG boxInterPro annotationAdd BLAST69
Domaini278 – 418Sox C-terminalInterPro annotationAdd BLAST141

Family and domain databases

Gene3Di1.10.30.10, 1 hit
InterProiView protein in InterPro
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
IPR033392 Sox7/17/18_central
IPR021934 Sox_C
PfamiView protein in Pfam
PF00505 HMG_box, 1 hit
PF12067 Sox17_18_mid, 1 hit
SMARTiView protein in SMART
SM00398 HMG, 1 hit
SUPFAMiSSF47095 SSF47095, 1 hit
PROSITEiView protein in PROSITE
PS50118 HMG_BOX_2, 1 hit
PS51516 SOX_C, 1 hit

Sequencei

Sequence statusi: Complete.

A0A1U7RF78-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSSPDAGYAS DDQSQPRSAL PAVMAGLGPC PWAESLSPLG DVKVKGEVVA
60 70 80 90 100
GSGTPAGTSS RAKAESRIRR PMNAFMVWAK DERKRLAQQN PDLHNAELSK
110 120 130 140 150
MLGKSWKALT LAEKRPFVEE AERLRVQHMQ DHPNYKYRPR RRKQVKRMKR
160 170 180 190 200
VEGGFLHALA EPQAAALGPE GGRVTMDGLG LPFPEPGFAA GPQLLPPHMG
210 220 230 240 250
AHYRDCQGLG APALDGYPLP TPDTSPLDGV EQDPAYFAAP LPGDCPAASA
260 270 280 290 300
YSYAPVSDYT VPAEPPAGPM RVGPEPSGPA MPGILAPPSA LHLYYGAMGS
310 320 330 340 350
PAASAGRGFH AQPQQPLQPQ APPQPPPQQH PAHGPGQPSP PPEALPCRDG
360 370 380 390 400
TDPNQPTELL GEVDRTEFEQ YLHFVYKPEM GLPYQGHDCS VNLSDSHGAI
410
SSVVSDASSA VYYCNYPDI
Length:419
Mass (Da):44,726
Last modified:May 10, 2017 - v1
Checksum:i6A5203BC061E1798
GO

Sequence databases

RefSeqiXP_005085983.1, XM_005085926.1

Genome annotation databases

GeneIDi101844073

Similar proteinsi

Cross-referencesi

Sequence databases

RefSeqiXP_005085983.1, XM_005085926.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi101844073

Organism-specific databases

CTDi64321

Family and domain databases

Gene3Di1.10.30.10, 1 hit
InterProiView protein in InterPro
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
IPR033392 Sox7/17/18_central
IPR021934 Sox_C
PfamiView protein in Pfam
PF00505 HMG_box, 1 hit
PF12067 Sox17_18_mid, 1 hit
SMARTiView protein in SMART
SM00398 HMG, 1 hit
SUPFAMiSSF47095 SSF47095, 1 hit
PROSITEiView protein in PROSITE
PS50118 HMG_BOX_2, 1 hit
PS51516 SOX_C, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A1U7RF78_MESAU
AccessioniPrimary (citable) accession number: A0A1U7RF78
Entry historyiIntegrated into UniProtKB/TrEMBL: May 10, 2017
Last sequence update: May 10, 2017
Last modified: October 25, 2017
This is version 6 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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