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Protein

RNA polymerase sigma factor RpoD

Gene

rpoD

Organism
Campylobacter pinnipediorum subsp. caledonicus
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.SAAS annotation

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi581 – 600H-T-H motifUniRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation, NucleotidyltransferaseImported, Sigma factorUniRule annotationSAAS annotation, Transferase
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factor RpoDUniRule annotation
Alternative name(s):
Sigma-70UniRule annotation
Gene namesi
Name:rpoDUniRule annotationImported
ORF Names:CPIN18021_0620Imported
OrganismiCampylobacter pinnipediorum subsp. caledonicusImported
Taxonomic identifieri1874362 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesCampylobacteraceaeCampylobacter
Proteomesi
  • UP000190868 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Subunit structurei

Interacts transiently with the RNA polymerase catalytic core.UniRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini410 – 423RNA_pol_sigma70InterPro annotationAdd BLAST14
Domaini580 – 606RNA_pol_sigma70InterPro annotationAdd BLAST27

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni386 – 456Sigma-70 factor domain-2UniRule annotationAdd BLAST71
Regioni465 – 541Sigma-70 factor domain-3UniRule annotationAdd BLAST77

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili60 – 87Sequence analysisAdd BLAST28
Coiled coili544 – 564Sequence analysisAdd BLAST21

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi410 – 413Interaction with polymerase core subunit RpoCUniRule annotation4

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

KOiK03086

Family and domain databases

Gene3Di1.10.10.10, 2 hits
HAMAPiMF_00963 Sigma70_RpoD_SigA, 1 hit
InterProiView protein in InterPro
IPR014284 RNA_pol_sigma-70_dom
IPR000943 RNA_pol_sigma70
IPR009042 RNA_pol_sigma70_r1_2
IPR007627 RNA_pol_sigma70_r2
IPR007624 RNA_pol_sigma70_r3
IPR007630 RNA_pol_sigma70_r4
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR012760 RNA_pol_sigma_RpoD_C
IPR028630 Sigma70_RpoD
IPR036388 WH-like_DNA-bd_sf
PfamiView protein in Pfam
PF00140 Sigma70_r1_2, 1 hit
PF04542 Sigma70_r2, 1 hit
PF04539 Sigma70_r3, 1 hit
PF04545 Sigma70_r4, 1 hit
PRINTSiPR00046 SIGMA70FCT
SUPFAMiSSF88659 SSF88659, 2 hits
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02393 RpoD_Cterm, 1 hit
TIGR02937 sigma70-ECF, 1 hit
PROSITEiView protein in PROSITE
PS00715 SIGMA70_1, 1 hit
PS00716 SIGMA70_2, 1 hit

Sequencei

Sequence statusi: Complete.

A0A1S6U6S1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSSAKEAFSQ IEELFAENAK GFITYEKLVK LFDKAPTATI VKKIEALMNK
60 70 80 90 100
NKTQLLTAAE VAKMKNLADA KKRKKEAEEA QEENIDDDFD LANDSDYLEW
110 120 130 140 150
SRSDSPVRMY LREMGQISLL TKDEEVEISK KIELGEDIII DAFCSVPFLI
160 170 180 190 200
DFILDYKEPL INRERRVKEL FKSFEEDSDS DDDNDDDNDD DSSDLDDNNS
210 220 230 240 250
ETPASKKVAK NDKRALKVIE SFKALEKAKK EWLKTANKQG EIDKDDIFAN
260 270 280 290 300
INIAFKKKIL KDKLMDLGPT SKLISEIVKS METALKSDDE FDRELKRLEY
310 320 330 340 350
RLPMFSDELK KNHKGILKDI LKLSKDDIIA RVPEATMVST YVEIKKLFQT
360 370 380 390 400
KEASKQGFNL EPAKLKSVLE QIKRGKKISD EAKTRMAKSN LRLVVSIAKR
410 420 430 440 450
YTNRGLPFLD LIQEGNIGLM KAVDKFEYRK GYKFSTYATW WIRQAISRAI
460 470 480 490 500
ADQARTIRIP IHMIETINRI NKINRKYLQE EGKEPDVSVI AKEVGLSVDK
510 520 530 540 550
VKQVIKITKE PISLEAPIAN EDDGKFGDFV EDKNSLSPME HILKNDLREQ
560 570 580 590 600
IDDVLSQLND REKAVICMRF GLLDDESDRT LEEIGKALNV TRERVRQIES
610 620
SAIKKLKHPK VGRKLKNYIE G
Length:621
Mass (Da):71,297
Last modified:May 10, 2017 - v1
Checksum:i8A3FF41427785F20
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP017258 Genomic DNA Translation: AQW87441.1

Genome annotation databases

KEGGicpin:CPIN18020_0615

Similar proteinsi

Entry informationi

Entry nameiA0A1S6U6S1_9PROT
AccessioniPrimary (citable) accession number: A0A1S6U6S1
Entry historyiIntegrated into UniProtKB/TrEMBL: May 10, 2017
Last sequence update: May 10, 2017
Last modified: September 12, 2018
This is version 12 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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