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Protein
Submitted name:

protocadherin-10 isoform X2

Gene

pcdh10

Organism
Salmo salar (Atlantic salmon)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandCalciumSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
protocadherin-10 isoform X2Imported
Gene namesi
Name:pcdh10Imported
OrganismiSalmo salar (Atlantic salmon)Imported
Taxonomic identifieri8030 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiProtacanthopterygiiSalmoniformesSalmonidaeSalmoninaeSalmo
Proteomesi
  • UP000087266 Componenti: Genome assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei677 – 701HelicalSequence analysisAdd BLAST25

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 16Sequence analysisAdd BLAST16
ChainiPRO_501025559717 – 1022Sequence analysisAdd BLAST1006

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini34 – 118CAInterPro annotationAdd BLAST85
Domaini142 – 227CAInterPro annotationAdd BLAST86
Domaini251 – 335CAInterPro annotationAdd BLAST85
Domaini359 – 440CAInterPro annotationAdd BLAST82
Domaini464 – 550CAInterPro annotationAdd BLAST87
Domaini579 – 664CAInterPro annotationAdd BLAST86

Keywords - Domaini

RepeatSAAS annotation, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Family and domain databases

InterProiView protein in InterPro
IPR002126 Cadherin-like_dom
IPR015919 Cadherin-like_sf
IPR032455 Cadherin_C
IPR020894 Cadherin_CS
IPR013164 Cadherin_N
IPR030712 Protocadherin-10
PANTHERiPTHR24028:SF0 PTHR24028:SF0, 1 hit
PfamiView protein in Pfam
PF00028 Cadherin, 5 hits
PF08266 Cadherin_2, 1 hit
PF16492 Cadherin_C_2, 1 hit
PRINTSiPR00205 CADHERIN
SMARTiView protein in SMART
SM00112 CA, 6 hits
SUPFAMiSSF49313 SSF49313, 6 hits
PROSITEiView protein in PROSITE
PS00232 CADHERIN_1, 3 hits

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All

A0A1S3SU19-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MIVLFLLLCI TNGVVSQIRY SVPEEADHGT FVGNIAEDLG LDMTKIASRR
60 70 80 90 100
FQVVPSSRTP YLEVNMENGI LFVNERIDRE QICKQSASCL LHLEVFLENP
110 120 130 140 150
LELFRVEIEV VDINDNPPSF PETDITVEIS ESATPGTRFP LESAFDPDVG
160 170 180 190 200
SNALRTYDIT TNNYFYLDVQ TQTDGNKFAE LVLEKPLDRE QQAAHRYVLT
210 220 230 240 250
AVDGGQPPRT GTALLVVKVL DSNDNVPVFD QPVYSVSLQE NAPVGTLVIQ
260 270 280 290 300
LNATDLDEGQ NGEIVYSFSN HISSRVKDLF AIDARTGRIE VCGEVDFEES
310 320 330 340 350
SLYQIFVQAK DLGPNAVAAH CKVLVKVTDV NDNAPDITFS TVTESVSERA
360 370 380 390 400
APGTVIALLS VTDKDAEENG KIHVEILGDV PFKLKPSFRN YFTIVTDGPL
410 420 430 440 450
NRENADSYSV TVVAKDTGTP SLATSKSIKV QVSDENDNAP TFTQPIYDVY
460 470 480 490 500
VTENNVPGAY IHAVTALDPD VGQNALISYS IMDCDIQGMS VKTYVSINEE
510 520 530 540 550
TGYLYALRSF DYEQLKDFTF MVQAKDAGSP ELSSNATVKV IIVDQNDNPP
560 570 580 590 600
SVIAPLGKNG TAREPLPRSA EPGYLVTRIV AMDADDGENA RLSYSIQRGN
610 620 630 640 650
ENGMFRMDWR TGELRTARRV STKRDPNQMY DLLIEVRDHG QPPLSSTASV
660 670 680 690 700
FVVLVDSVVE DHRERGTAKS KETTLDLTLI LIIALGSVSF IFLLAMIVLA
710 720 730 740 750
VRCQKDKKLN IYTCLTSDCC LGCATCCSRH ARARKKKLSK SDIMLVQSAN
760 770 780 790 800
VTGAGTAQVP VEESGSFGSH HQNQNYCYQV CLTPESAKTD LMFLKPCSPS
810 820 830 840 850
RSTDTEHNPC GAIVTGYTDQ QPDIISNGSI LSSETKHQRA ELSYLVDRPR
860 870 880 890 900
RVNSSAFQEA DLVSSKDSGH GDSEQGDSDH DATNRGHSTG ADLFSNCTEE
910 920 930 940 950
CKALGHSDRC WMPSFVPSDG RQAADYRSNL HVPGMDSVPD TEVFESQEQT
960 970 980 990 1000
GDKSFSTFGK ETPLSHLYQN HYQNHHKNHL HLSHHHATHA NQATLERREF
1010 1020
EALLSSTRAP YKPAYVTRKR VC
Length:1,022
Mass (Da):112,713
Last modified:April 12, 2017 - v1
Checksum:iA5AC94054C3FD765
GO

Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1S3SU15A0A1S3SU15_SALSA
protocadherin-10 isoform X1
pcdh10
1,032Annotation score:
A0A1S3SU23A0A1S3SU23_SALSA
protocadherin-10 isoform X3
pcdh10
977Annotation score:
A0A1S3SU37A0A1S3SU37_SALSA
protocadherin-10 isoform X4
pcdh10
959Annotation score:

Sequence databases

RefSeqiXP_014067839.1, XM_014212364.1

Genome annotation databases

GeneIDi106611784

Similar proteinsi

Cross-referencesi

Sequence databases

RefSeqiXP_014067839.1, XM_014212364.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi106611784

Organism-specific databases

CTDi57575

Family and domain databases

InterProiView protein in InterPro
IPR002126 Cadherin-like_dom
IPR015919 Cadherin-like_sf
IPR032455 Cadherin_C
IPR020894 Cadherin_CS
IPR013164 Cadherin_N
IPR030712 Protocadherin-10
PANTHERiPTHR24028:SF0 PTHR24028:SF0, 1 hit
PfamiView protein in Pfam
PF00028 Cadherin, 5 hits
PF08266 Cadherin_2, 1 hit
PF16492 Cadherin_C_2, 1 hit
PRINTSiPR00205 CADHERIN
SMARTiView protein in SMART
SM00112 CA, 6 hits
SUPFAMiSSF49313 SSF49313, 6 hits
PROSITEiView protein in PROSITE
PS00232 CADHERIN_1, 3 hits
ProtoNetiSearch...

Entry informationi

Entry nameiA0A1S3SU19_SALSA
AccessioniPrimary (citable) accession number: A0A1S3SU19
Entry historyiIntegrated into UniProtKB/TrEMBL: April 12, 2017
Last sequence update: April 12, 2017
Last modified: November 7, 2018
This is version 7 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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