Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Entry version 11 (05 Jun 2019)
Sequence version 1 (12 Apr 2017)
Previous versions | rss
Other tutorials and videosHelp videoFeedback
Protein
Submitted name:

period circadian protein homolog 1-like isoform X1

Gene

LOC106608520

Organism
Salmo salar (Atlantic salmon)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
period circadian protein homolog 1-like isoform X1Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:LOC106608520Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSalmo salar (Atlantic salmon)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri8030 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiProtacanthopterygiiSalmoniformesSalmonidaeSalmoninaeSalmo
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000087266 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome assembly

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini420 – 463PASInterPro annotationAdd BLAST44

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 178DisorderedSequence analysisAdd BLAST178
Regioni702 – 737DisorderedSequence analysisAdd BLAST36
Regioni787 – 823DisorderedSequence analysisAdd BLAST37
Regioni864 – 937DisorderedSequence analysisAdd BLAST74
Regioni1067 – 1096DisorderedSequence analysisAdd BLAST30
Regioni1129 – 1255DisorderedSequence analysisAdd BLAST127
Regioni1348 – 1403DisorderedSequence analysisAdd BLAST56

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi35 – 75PolarSequence analysisAdd BLAST41
Compositional biasi86 – 178PolarSequence analysisAdd BLAST93
Compositional biasi702 – 728PolarSequence analysisAdd BLAST27
Compositional biasi788 – 816Pro-richSequence analysisAdd BLAST29
Compositional biasi922 – 937PolarSequence analysisAdd BLAST16
Compositional biasi1067 – 1087PolarSequence analysisAdd BLAST21
Compositional biasi1172 – 1234PolarSequence analysisAdd BLAST63
Compositional biasi1235 – 1255PolyampholyteSequence analysisAdd BLAST21
Compositional biasi1356 – 1370PolyampholyteSequence analysisAdd BLAST15
Compositional biasi1388 – 1403PolyampholyteSequence analysisAdd BLAST16

Phylogenomic databases

KEGG Orthology (KO)

More...
KOi
K21944

Database of Orthologous Groups

More...
OrthoDBi
145617at2759

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00130 PAS, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR000014 PAS
IPR035965 PAS-like_dom_sf
IPR013655 PAS_fold_3
IPR022728 Period_circadian-like_C

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF08447 PAS_3, 1 hit
PF12114 Period_C, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00091 PAS, 2 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF55785 SSF55785, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50112 PAS, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

A0A1S3SC83-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSYDNSNSAP GDDTWGRVGS ANEEEEEEEE EAGTGVSSPG SNNNHGSQSG
60 70 80 90 100
TSNLANRVRG SSPSGSGSGG SSGGDQRGPG SDDGDALSSG NDSGERESSE
110 120 130 140 150
GGSGSRGHQS RSSHCSSSQK DSGMMLENTE SNKSSNSQSQ SPSPPSSSLA
160 170 180 190 200
YSLLSASSEQ DPPSTSGCSS NEQHQTARVQ TQKEMLKALK ELKVRLPAEC
210 220 230 240 250
KGKGRSSTLD ALRYALNCVK QVRANQEYYH QWSVEECHGC SLDLSAYTIE
260 270 280 290 300
ELDNIASEYT LKNTDTFSMA VSFLTGKVVY ISPQGSSLLR CKPERLQGAI
310 320 330 340 350
FSELLAPQDV STFYSSTAPC RLPAWATCMG SVSPPTDCTQ EKSMFCRISA
360 370 380 390 400
DRAQGGEIKY FPFRMTPYQL TLRDLDTSDP QPCCLLIAER VQSGYEAPRI
410 420 430 440 450
PADKRIFSTS HTPSCLFQEV DERAVPLLGY LPQDLVGSPV LLYLHPEDRP
460 470 480 490 500
IMVAIHRKIL QSAGQPFDSS PMRMCARSGE YVTIDTSWSS FINPWSRKVA
510 520 530 540 550
FIVGRHKVRT SPLNEDVFTP LRGCEGRPMA PEIVQLSEQI HRLLVQPVHS
560 570 580 590 600
GGSQGYSSLA SNGSCSLEQQ YRRTASSDSK STNAMEAMEA AVVALHKPMT
610 620 630 640 650
FQQICKDVHM VKASGQQVFI DSRNRALSRR HAVTALRAIG EVEPIKSLIP
660 670 680 690 700
EVVCPPKTPV LNTQQLMMEE PPSAYSYQQI NCLDSIIRFL DGCNVPNKVK
710 720 730 740 750
RKFGSSSGTS TSDEDKQQQE TAGSAKGGPA TTVTLVGDSA GVPPLAMHSH
760 770 780 790 800
KAKSVASFTS QCSFSSTIVH VGDKKPPESD VVMEDAPPTP MPATPTTTKS
810 820 830 840 850
PPTAIIAPPP PKTTSPPSRR GGGLTKGLGL TKEVLSAHTQ QEEQAFLCRF
860 870 880 890 900
SDLSQLRVIE PASSLRCPLP NSNPRRRGAC SPDYPAAGGS SGAKRLKQQE
910 920 930 940 950
SSEQRGPLAL GLTGPLGGPN VVPMNSPNTS TYTLPMMPLG PPTTSSWPPS
960 970 980 990 1000
VGSQASLPSL PYPSGTLPLY PIYPPLSQPI QNQMVPPMMA LVLPNYMFPQ
1010 1020 1030 1040 1050
LNPNLPQMAT AMNTMGSPMP QPGAAMVTPG PQQFFNPNAG FPFPGSNVTP
1060 1070 1080 1090 1100
CPMPTMPSLM QTAMPIQTQR PASGSSTPQS CSQVPVDQEG AESPLFHSRC
1110 1120 1130 1140 1150
SSPLNLLQLV EESPSNRLEV ATALAASAQQ VTIPTQGTRG RSADDSKENA
1160 1170 1180 1190 1200
NDSNQDGEST PSDLLDLLLQ EDSRSGSRSA ASGSGSSGSG SSGSGSSGSG
1210 1220 1230 1240 1250
SVSLGTVSNG CSSSGSGTSR SRSSHTSKYF GSIDSSENDH SRKQPAGGSR
1260 1270 1280 1290 1300
ARGDGEEQLI KCVLQDPIWL LMANTDHKVM MTYQLPTKDR ETVLRQDREA
1310 1320 1330 1340 1350
LRAMHKHQPR FTEDQKRELS QVHPWIRTGR LPRAINVSAC MGCKSSPLPE
1360 1370 1380 1390 1400
STMDQGGEAC REEGHAAHSE TQGNDQEMTT EEQEVTWPTE EEQARAADTD

MTH
Length:1,403
Mass (Da):150,256
Last modified:April 12, 2017 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i0BF72CA03D54A6E9
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1S3SC82A0A1S3SC82_SALSA
period circadian protein homolog 1-...
LOC106608520
1,350Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

NCBI Reference Sequences

More...
RefSeqi
XP_014061946.1, XM_014206471.1
XP_014061947.1, XM_014206472.1
XP_014061949.1, XM_014206474.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
106608520

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
sasa:106608520

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

RefSeqiXP_014061946.1, XM_014206471.1
XP_014061947.1, XM_014206472.1
XP_014061949.1, XM_014206474.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi106608520
KEGGisasa:106608520

Phylogenomic databases

KOiK21944
OrthoDBi145617at2759

Family and domain databases

CDDicd00130 PAS, 1 hit
InterProiView protein in InterPro
IPR000014 PAS
IPR035965 PAS-like_dom_sf
IPR013655 PAS_fold_3
IPR022728 Period_circadian-like_C
PfamiView protein in Pfam
PF08447 PAS_3, 1 hit
PF12114 Period_C, 1 hit
SMARTiView protein in SMART
SM00091 PAS, 2 hits
SUPFAMiSSF55785 SSF55785, 1 hit
PROSITEiView protein in PROSITE
PS50112 PAS, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiA0A1S3SC83_SALSA
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: A0A1S3SC83
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: April 12, 2017
Last sequence update: April 12, 2017
Last modified: June 5, 2019
This is version 11 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again