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Protein

RNA helicase

Gene

ddx31

Organism
Salmo salar (Atlantic salmon)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + H2O = ADP + phosphate.SAAS annotation

GO - Molecular functioni

Keywordsi

Molecular functionHelicaseUniRule annotationSAAS annotationImported, Hydrolase, RNA-bindingSAAS annotation
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
RNA helicaseSAAS annotation (EC:3.6.4.13SAAS annotation)
Gene namesi
Name:ddx31Imported
OrganismiSalmo salar (Atlantic salmon)Imported
Taxonomic identifieri8030 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiProtacanthopterygiiSalmoniformesSalmonidaeSalmoninaeSalmo
Proteomesi
  • UP000087266 Componenti: Genome assembly

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini160 – 189Q_MOTIFInterPro annotationAdd BLAST30
Domaini192 – 373Helicase ATP-bindingInterPro annotationAdd BLAST182
Domaini404 – 575Helicase C-terminalInterPro annotationAdd BLAST172

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi160 – 189Q motifPROSITE-ProRule annotationAdd BLAST30

Sequence similaritiesi

Belongs to the DEAD box helicase family.UniRule annotationSAAS annotation

Family and domain databases

CDDicd00079 HELICc, 1 hit
InterProiView protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR025313 DUF4217
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR000629 RNA-helicase_DEAD-box_CS
IPR014014 RNA_helicase_DEAD_Q_motif
PfamiView protein in Pfam
PF00270 DEAD, 1 hit
PF13959 DUF4217, 1 hit
PF00271 Helicase_C, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM01178 DUF4217, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS00039 DEAD_ATP_HELICASE, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51195 Q_MOTIF, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All

A0A1S3PRI2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAEDTLMLNL SSDSAPAFHS KSYQRPTSQE KWALKKAQKR KYSAIQKGLP
60 70 80 90 100
DKQGFNGPKT KDQQPPEDKD EEDVPAHKSP VRKPAPKDAA KALSPKTPKP
110 120 130 140 150
AQRFKAHPKM TPKSKHVGEH KGGEDSVFIK TSSLFKNNPD VPDVHRPAVT
160 170 180 190 200
QLKEKVFTSD SFAELDLHPH LVATLTKVLN VTTMTSVQKE TIPVLLSGQD
210 220 230 240 250
AVVRSQTGSG KTLAYGIPLV QSLQAVEPKI KRGDGPLAVI VVPTRELAQQ
260 270 280 290 300
SFQIFQKLLK PFTWIVPGVL MGGEKRKAEK ARLRKGINIL ITTPGRLVDH
310 320 330 340 350
IKNTLSIAFS AVRWLILDEA DRILDLGFEK DLTVILNSLN ATGPPRQNVL
360 370 380 390 400
LSATLTDGLS RLAGISMKEP VSIQVGENSE GINELTPDPT TAQGKSDRFA
410 420 430 440 450
VPERLQQHMV VVPSKLRLVC LAAFILSKCK FEKGHKIIVF VSSCEAVEFL
460 470 480 490 500
LILFNAVLSG PKAKQQPLLS FFRLHGNMKQ EERTEVFQEF SLCKTGILLC
510 520 530 540 550
TDVAARGLDM PQVTWIVQYN PPTTPAEYVH RVGRTARIGA KGSSLLFLTP
560 570 580 590 600
AEMSYVTSLA NHNISLSEMK MEMILSTLML DNRFKVRGKY DGKMSSGALE
610 620 630 640 650
QEVRDRATVL QTEFENAVHN DVDSVQAAKR ALQSFLRAYT AYPSNMKHIF
660 670 680 690 700
HIKALHLGHA AKSFGLRDAP QGLVTAPAKG SNKDKGQAKD KRQSRQQMAH
710 720 730 740 750
RQQSWGQICS DRLAETGSLR PLKKFSTEER VASLTRSEYA SGIDGDSAAK
760
KKKKKKKSQA NGEEDRVE
Length:768
Mass (Da):84,884
Last modified:April 12, 2017 - v1
Checksum:i24A33201E0E16568
GO

Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1S3PRI0A0A1S3PRI0_SALSA
RNA helicase
ddx31
777Annotation score:
A0A1S3PSU7A0A1S3PSU7_SALSA
RNA helicase
ddx31
740Annotation score:
A0A1S3PRI5A0A1S3PRI5_SALSA
RNA helicase
ddx31
749Annotation score:

Sequence databases

RefSeqiXP_014030292.1, XM_014174817.1

Genome annotation databases

GeneIDi106587013

Similar proteinsi

Cross-referencesi

Sequence databases

RefSeqiXP_014030292.1, XM_014174817.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi106587013

Organism-specific databases

CTDi64794

Family and domain databases

CDDicd00079 HELICc, 1 hit
InterProiView protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR025313 DUF4217
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR000629 RNA-helicase_DEAD-box_CS
IPR014014 RNA_helicase_DEAD_Q_motif
PfamiView protein in Pfam
PF00270 DEAD, 1 hit
PF13959 DUF4217, 1 hit
PF00271 Helicase_C, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM01178 DUF4217, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS00039 DEAD_ATP_HELICASE, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51195 Q_MOTIF, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A1S3PRI2_SALSA
AccessioniPrimary (citable) accession number: A0A1S3PRI2
Entry historyiIntegrated into UniProtKB/TrEMBL: April 12, 2017
Last sequence update: April 12, 2017
Last modified: November 7, 2018
This is version 6 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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