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Protein
Submitted name:

THO complex subunit 6 homolog isoform X2

Gene

thoc6

Organism
Salmo salar (Atlantic salmon)
Status
Unreviewed-Annotation score: -Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
THO complex subunit 6 homolog isoform X2Imported
Gene namesi
Name:thoc6Imported
OrganismiSalmo salar (Atlantic salmon)Imported
Taxonomic identifieri8030 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiProtacanthopterygiiSalmoniformesSalmonidaeSalmoninaeSalmo
Proteomesi
  • UP000087266 Componenti: Genome assembly

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini98 – 181WD_REPEATS_REGIONInterPro annotationAdd BLAST84
Repeati140 – 181WDPROSITE-ProRule annotationAdd BLAST42

Keywords - Domaini

WD repeatPROSITE-ProRule annotation

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00400 WD40, 1 hit
SMARTiView protein in SMART
SM00320 WD40, 3 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50082 WD_REPEATS_2, 1 hit
PS50294 WD_REPEATS_REGION, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

A0A1S3P8P3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSVFSQSFSP CGRFLAAGNN YGEIAVFSLS SALSPDATDL SQKPILTFTA
60 70 80 90 100
HEGPVFSLLS TDSHLLSAGN GEISAWSWAE LIKRNTKAAW TKRPNYKSSL
110 120 130 140 150
EIPEINAMTI NPTENSLVIG GGDNNIHIMD LESGVFKSVL QGHTDYIHCL
160 170 180 190 200
SVREREGEIL SGSEDGAVRI WDYRTGQSVH CIEVYKYEEC ARPQYGKWIS
210 220 230 240 250
CLTTDSDWML CGGGPSLSLW HLRSMSPTSI FPLSGCQRQA NFYQDMILSV
260 270 280 290 300
GEGQCVSHCL LGGEVKAQIP CTPHSLNTLA LNLNSTEHRV LTVGGSSHQM
310
DVFTNLSYRT FSLSF
Length:315
Mass (Da):34,558
Last modified:April 12, 2017 - v1
Checksum:i126AC55E2CCB3FBE
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1S3P8X4A0A1S3P8X4_SALSA
THO complex subunit 6 homolog isofo...
thoc6
211Annotation score:
A0A1S3P8S6A0A1S3P8S6_SALSA
THO complex subunit 6 homolog isofo...
thoc6
323Annotation score:

Sequence databases

RefSeqiXP_014024000.1, XM_014168525.1
UniGeneiSsa.1326

Genome annotation databases

GeneIDi100196413

Similar proteinsi

Cross-referencesi

Sequence databases

RefSeqiXP_014024000.1, XM_014168525.1
UniGeneiSsa.1326

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi100196413

Organism-specific databases

CTDi79228

Family and domain databases

Gene3Di2.130.10.10, 1 hit
InterProiView protein in InterPro
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF00400 WD40, 1 hit
SMARTiView protein in SMART
SM00320 WD40, 3 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS50082 WD_REPEATS_2, 1 hit
PS50294 WD_REPEATS_REGION, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiA0A1S3P8P3_SALSA
AccessioniPrimary (citable) accession number: A0A1S3P8P3
Entry historyiIntegrated into UniProtKB/TrEMBL: April 12, 2017
Last sequence update: April 12, 2017
Last modified: February 28, 2018
This is version 8 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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