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Protein
Submitted name:

RNA-binding protein 45

Gene

rbm45

Organism
Salmo salar (Atlantic salmon)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA-binding protein 45Imported
Gene namesi
Name:rbm45Imported
OrganismiSalmo salar (Atlantic salmon)Imported
Taxonomic identifieri8030 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiProtacanthopterygiiSalmoniformesSalmonidaeSalmoninaeSalmo
Proteomesi
  • UP000087266 Componenti: Genome assembly

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 98RRMInterPro annotationAdd BLAST93
Domaini113 – 184RRMInterPro annotationAdd BLAST72
Domaini236 – 313RRMInterPro annotationAdd BLAST78
Domaini384 – 456RRMInterPro annotationAdd BLAST73

Family and domain databases

CDDicd12366 RRM1_RBM45, 1 hit
cd12367 RRM2_RBM45, 1 hit
cd12368 RRM3_RBM45, 1 hit
cd12369 RRM4_RBM45, 1 hit
Gene3Di3.30.70.330, 4 hits
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR034203 RBM45_RRM1
IPR034206 RBM45_RRM2
IPR034207 RBM45_RRM3
IPR034208 RBM45_RRM4
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 4 hits
SMARTiView protein in SMART
SM00360 RRM, 4 hits
SUPFAMiSSF54928 SSF54928, 2 hits
PROSITEiView protein in PROSITE
PS50102 RRM, 4 hits

Sequencei

Sequence statusi: Complete.

A0A1S3MU34-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEDYSSKQSV ENLDNPPNSR LFLVTSRSVS DDVIREKFSV FGEVQGVWVV
60 70 80 90 100
KDKQTKESKG ISYVKFAKSS EACTAMEDMH GKCLLDGTKP IKVFIAQSRS
110 120 130 140 150
SGRHRDVEDE ELTRIFVKIP KTFTEEDLKD TFKEYGDIEY CVIIKNKTTG
160 170 180 190 200
ESKGLGYVRY HKPSQAAIAI ENCDRAYRAV LAEPRSKNSS ADNDYHSSGR
210 220 230 240 250
AEHMSSDLGM NPYSFGVSDT GSYAVTDYRS SDLITRCLMV SSRASVTQEQ
260 270 280 290 300
IYGLFDLIPG MDYCEMQRDH CGLNKGHAVI RYNNLGSAVY AKEKLNGFEY
310 320 330 340 350
PPGNRLIVAH IEDGEDRTSP VGKMAMQLVA AQMMSMVWNG PTTSQQLMKM
360 370 380 390 400
STGYRTASPM PRVQTDVSLP PLKNLAPPDS RVKERLFVVF SPAPLPMDVL
410 420 430 440 450
EDVFCRFGSL VEVHLVPGRN VGYMKYAEKE SAGDAMAALH GKMVNGVRMK
460 470
VMLADPPREP REESHKRPRT Y
Length:471
Mass (Da):52,723
Last modified:April 12, 2017 - v1
Checksum:i1C7DA8FE2AD1A9A7
GO

Sequence databases

RefSeqiXP_014006686.1, XM_014151211.1
XP_014006687.1, XM_014151212.1
XP_014006688.1, XM_014151213.1

Genome annotation databases

GeneIDi106575066
KEGGisasa:106575066

Similar proteinsi

Cross-referencesi

Sequence databases

RefSeqiXP_014006686.1, XM_014151211.1
XP_014006687.1, XM_014151212.1
XP_014006688.1, XM_014151213.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi106575066
KEGGisasa:106575066

Organism-specific databases

CTDi129831

Family and domain databases

CDDicd12366 RRM1_RBM45, 1 hit
cd12367 RRM2_RBM45, 1 hit
cd12368 RRM3_RBM45, 1 hit
cd12369 RRM4_RBM45, 1 hit
Gene3Di3.30.70.330, 4 hits
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR034203 RBM45_RRM1
IPR034206 RBM45_RRM2
IPR034207 RBM45_RRM3
IPR034208 RBM45_RRM4
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 4 hits
SMARTiView protein in SMART
SM00360 RRM, 4 hits
SUPFAMiSSF54928 SSF54928, 2 hits
PROSITEiView protein in PROSITE
PS50102 RRM, 4 hits
ProtoNetiSearch...

Entry informationi

Entry nameiA0A1S3MU34_SALSA
AccessioniPrimary (citable) accession number: A0A1S3MU34
Entry historyiIntegrated into UniProtKB/TrEMBL: April 12, 2017
Last sequence update: April 12, 2017
Last modified: November 7, 2018
This is version 10 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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