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Protein
Submitted name:

U11/U12 small nuclear ribonucleoprotein 35 kDa protein-like

Gene

LOC106568310

Organism
Salmo salar (Atlantic salmon)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionRibonucleoproteinImported, RNA-bindingPROSITE-ProRule annotation, Viral nucleoproteinImported

Names & Taxonomyi

Protein namesi
Submitted name:
U11/U12 small nuclear ribonucleoprotein 35 kDa protein-likeImported
Gene namesi
Name:LOC106568310Imported
Synonyms:snrnp35Imported
OrganismiSalmo salar (Atlantic salmon)Imported
Taxonomic identifieri8030 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiProtacanthopterygiiSalmoniformesSalmonidaeSalmoninaeSalmo
Proteomesi
  • UP000087266 Componenti: Genome assembly

Subcellular locationi

    Keywords - Cellular componenti

    Virion

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Domaini51 – 129RRMInterPro annotationAdd BLAST79

    Phylogenomic databases

    KOiK13155

    Family and domain databases

    CDDicd12237 RRM_snRNP35, 1 hit
    Gene3Di3.30.70.330, 1 hit
    InterProiView protein in InterPro
    IPR012677 Nucleotide-bd_a/b_plait_sf
    IPR035979 RBD_domain_sf
    IPR000504 RRM_dom
    IPR034146 snRNP35_RRM
    PfamiView protein in Pfam
    PF00076 RRM_1, 1 hit
    SMARTiView protein in SMART
    SM00360 RRM, 1 hit
    SUPFAMiSSF54928 SSF54928, 1 hit
    PROSITEiView protein in PROSITE
    PS50102 RRM, 1 hit

    Sequencei

    Sequence statusi: Complete.

    A0A1S3LST4-1 [UniParc]FASTAAdd to basket
    « Hide
            10         20         30         40         50
    MNDWSPVAKV YDPLKAGSID GTDVEPHDRA VWRAMVARYK PNKAVVGDPL
    60 70 80 90 100
    LTLFVARLNP QTTEEKLNEV FSNYGDIRRL RLVRDIVTGF SKGYAFVEYK
    110 120 130 140 150
    EERSVVRARR DANKLVVDQS ELFVDFEQER TLKGWVPRRL GGGQGGKKES
    160 170 180 190 200
    GQLRFGGKDR PFRKPINLPV TMNQEWGGGG RECERGGERE ERYRDGSLSR
    210 220 230 240 250
    ERETDWGSRG RRDDRDRGRE RGVEREYHRE RRDRSYERES TRERESTRER
    260 270 280 290
    ESTRERESTR ERESTRERDD RRERDDRRHR DDKYRHRDRR
    Length:290
    Mass (Da):34,577
    Last modified:April 12, 2017 - v1
    Checksum:iD4CC157545EB8CAD
    GO

    Sequence databases

    RefSeqiXP_013993960.1, XM_014138485.1
    XP_013994007.1, XM_014138532.1

    Genome annotation databases

    GeneIDi106568290
    106568310
    KEGGisasa:106568290
    sasa:106568310

    Similar proteinsi

    Cross-referencesi

    Sequence databases

    RefSeqiXP_013993960.1, XM_014138485.1
    XP_013994007.1, XM_014138532.1

    3D structure databases

    ModBaseiSearch...
    MobiDBiSearch...

    Protocols and materials databases

    Structural Biology KnowledgebaseSearch...

    Genome annotation databases

    GeneIDi106568290
    106568310
    KEGGisasa:106568290
    sasa:106568310

    Organism-specific databases

    CTDi11066

    Phylogenomic databases

    KOiK13155

    Family and domain databases

    CDDicd12237 RRM_snRNP35, 1 hit
    Gene3Di3.30.70.330, 1 hit
    InterProiView protein in InterPro
    IPR012677 Nucleotide-bd_a/b_plait_sf
    IPR035979 RBD_domain_sf
    IPR000504 RRM_dom
    IPR034146 snRNP35_RRM
    PfamiView protein in Pfam
    PF00076 RRM_1, 1 hit
    SMARTiView protein in SMART
    SM00360 RRM, 1 hit
    SUPFAMiSSF54928 SSF54928, 1 hit
    PROSITEiView protein in PROSITE
    PS50102 RRM, 1 hit
    ProtoNetiSearch...

    Entry informationi

    Entry nameiA0A1S3LST4_SALSA
    AccessioniPrimary (citable) accession number: A0A1S3LST4
    Entry historyiIntegrated into UniProtKB/TrEMBL: April 12, 2017
    Last sequence update: April 12, 2017
    Last modified: June 20, 2018
    This is version 12 of the entry and version 1 of the sequence. See complete history.
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported
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    Main funding by: National Institutes of Health

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